CuGenDBv2

Gene ID	Lsi07G010010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome f
Genome location	chr07:14235582..14235954
RNA-Seq Expression	Lsi07G010010
Synteny	Lsi07G010010
Gene Ontology terms	GO:0006633 - fatty acid biosynthetic process (biological process) GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009317 - acetyl-CoA carboxylase complex (cellular component) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0003989 - acetyl-CoA carboxylase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR011054 - Rudiment single hybrid motif IPR024058 - Cytochrome f transmembrane anchor

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AES88213.2 apocytochrome protein F [Medicago truncatula]

1.9e-23

68.63

Show/hide

Query:  SKNNIYNATAA---------------GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKM
        S NN+YNATA                GPELLVSEGES+KLDQ LTS+ N      GDAEIVLQDPLRVQG LFF AS+ILAQIFLVLKKKQFEKVQLS+M
Subjt:  SKNNIYNATAA---------------GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKM

Query:  NF
        NF
Subjt:  NF

KDP22688.1 hypothetical protein JCGZ_02529 [Jatropha curcas]

3.2e-26

81.61

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG  FF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

TKR74942.1 acetyl-CoA carboxylase beta subunit [Populus alba]

3.2e-26

81.61

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNAT AGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

TKS04878.1 Apocytochrome f [Populus alba]

1.1e-26

82.76

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

TKS05974.1 hypothetical protein D5086_0000127730 [Populus alba]

1.1e-26

82.76

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

TrEMBL top hits

e value

%identity

Alignment

A0A067JIP5 Cytochrome f

1.5e-26

81.61

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG  FF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

A0A4U5MZQ8 Cytochrome f

1.5e-26

81.61

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNAT AGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

A0A4U5Q3Z0 Cytochrome f

5.3e-27

82.76

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

A0A4U5Q6U2 Cytochrome f

5.3e-27

82.76

Show/hide

Query:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        S N +YNATAAGPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF ASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  SKNNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

G7JFY8 Cytochrome f

9.3e-24

68.63

Show/hide

Query:  SKNNIYNATAA---------------GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKM
        S NN+YNATA                GPELLVSEGES+KLDQ LTS+ N      GDAEIVLQDPLRVQG LFF AS+ILAQIFLVLKKKQFEKVQLS+M
Subjt:  SKNNIYNATAA---------------GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKM

Query:  NF
        NF
Subjt:  NF

SwissProt top hits

e value

%identity

Alignment

A6MM49 Cytochrome f

7.3e-26

77.65

Show/hide

Query:  NNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        + + N    GPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFFFASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  NNIYNATAAGPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

A8SEB6 Cytochrome f

4.8e-25

84.21

Show/hide

Query:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        GPELLVSEGESIK+DQ LTS+ N      GDAEIVLQDPLRVQG LFFFASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

P16013 Cytochrome f

4.8e-25

82.89

Show/hide

Query:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        GPELLVSEGESIKLDQ LTS+ N      GDAE+VLQDPLR+QG LFFFASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

P49161 Cytochrome f

3.6e-25

84.21

Show/hide

Query:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        GPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFFFAS+ILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

Q2QD76 Cytochrome f

2.8e-25

85.53

Show/hide

Query:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        GPELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFFFASVILAQIFLVLKKKQFEKVQLS+MNF
Subjt:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

5.4e-24

80.26

Show/hide

Query:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF
        G ELLVSEGESIKLDQ LTS+ N      GDAEIVLQDPLRVQG LFF  SV+LAQIFLVLKKKQFEKVQLS+MNF
Subjt:  GPELLVSEGESIKLDQSLTSDLN------GDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAGTAAAAATAATATTTATAATGCTACAGCAGCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAATCATTAACGAGTGATCTTAATGG
AGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCTTTTTGTTCTTTTTCGCATCTGTTATTTTGGCACAAATCTTTTTAGTTCTTAAAAAGAAACAGTTTG
AGAAGGTTCAATTGTCCAAAATGAATTTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSKNNIYNATAAGPELLVSEGESIKLDQSLTSDLNGDAEIVLQDPLRVQGFLFFFASVILAQIFLVLKKKQFEKVQLSKMNF

Lsi07G010010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome