CuGenDBv2

Gene ID	Lsi07G010020
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	chr07:14237282..14238004
RNA-Seq Expression	Lsi07G010020
Synteny	Lsi07G010020
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AES70098.1 DNA-directed RNA polymerase subunit beta [Medicago truncatula]

4.9e-23

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGIH QP+R  HN VYK FSD+IEGKEGRFRETLLGKRVDYSGRFVI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

QFR99555.1 RNA polymerase beta [Cyanotis ciliata]

6.3e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

QUB02164.1 RNA polymerase beta [Gibasis geniculata]

6.3e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

QUB02835.1 RNA polymerase beta [Weldenia candida]

6.3e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

RHN66862.1 DNA-directed RNA polymerase subunit beta' [Medicago truncatula]

4.9e-23

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGIH QP+R  HN VYK FSD+IEGKEGRFRETLLGKRVDYSGRFVI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

TrEMBL top hits

e value

%identity

Alignment

A0A396IMS2 DNA-directed RNA polymerase subunit

2.4e-23

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGIH QP+R  HN VYK FSD+IEGKEGRFRETLLGKRVDYSGRFVI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

A0A5P8SZE0 DNA-directed RNA polymerase subunit beta'

3.1e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

A0A6M6D7A3 DNA-directed RNA polymerase subunit beta'

3.1e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

A0A7D4X974 DNA-directed RNA polymerase subunit beta'

3.1e-23

86.15

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI RQP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

G7IXX0 DNA-directed RNA polymerase subunit

2.4e-23

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGIH QP+R  HN VYK FSD+IEGKEGRFRETLLGKRVDYSGRFVI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

SwissProt top hits

e value

%identity

Alignment

A9LYH6 DNA-directed RNA polymerase subunit beta'

9.2e-25

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Q06H06 DNA-directed RNA polymerase subunit beta'

7.0e-25

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Q09FX0 DNA-directed RNA polymerase subunit beta'

7.0e-25

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Q3V543 DNA-directed RNA polymerase subunit beta'

9.2e-25

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Q5QA71 DNA-directed RNA polymerase subunit beta'

9.2e-25

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Arabidopsis top hits

e value

%identity

Alignment

AT4G35800.1 RNA polymerase II large subunit

7.0e-04

38.33

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Query:  KLVQETVDTLLDNGIHRQP-VRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVI
        +L+Q  + T  DN +  QP       +  K     ++ KEGR R  L+GKRVD+S R VI
Subjt:  KLVQETVDTLLDNGIHRQP-VRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVI

ATCG00180.1 DNA-directed RNA polymerase family protein

6.5e-26

84.62

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Query:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV
        MC EKLVQE VDTLLDNGI  QP+R  HNKVYK FSDVIEGKEGRFRETLLGKRVDYSGR VI+V
Subjt:  MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIV

Sequences

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CDS sequence

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ATGTGTCCGGAGAAATTGGTACAAGAAACTGTGGATACACTTCTTGATAATGGAATCCACAGACAACCAGTGAGGGGTGACCATAATAAGGTTTACAAGTTGTTTTCTGA
TGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTTTGTGATTATTGTAAGAGAGAGAGAGCTCCCAACGTGGC
CGGCGGCGGCAATGACGAGTAGCATCCGTCAGCTTGAGAGATCCGACGATGTAGTCTGCACATGA

mRNA sequence

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Protein sequence

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MCPEKLVQETVDTLLDNGIHRQPVRGDHNKVYKLFSDVIEGKEGRFRETLLGKRVDYSGRFVIIVRERELPTWPAAAMTSSIRQLERSDDVVCT

Lsi07G010020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome