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Lsi07G010050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G010050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor UPBEAT1-like
Genome locationchr07:14428166..14428495
RNA-Seq ExpressionLsi07G010050
SyntenyLsi07G010050
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056655.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.7e-3577.98Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDRENAVSS
         DRENAVSS
Subjt:  GDRENAVSS

KAG6607102.1 hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3683.84Show/hide
Query:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS
        WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+EELFQ+TADYIVLLKNQVFVLQRLIEFYGS +RENAVS+
Subjt:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS

KAG7036793.1 hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-3177.78Show/hide
Query:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS
        WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+EELFQ+TADYI      VFVLQRLIEFYGS +RENAVS+
Subjt:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS

PON40768.1 transcription factor UPBEAT-like protein [Parasponia andersonii]3.3e-1554.13Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDRENAVS
        S D E+AVS
Subjt:  SGDRENAVS

TYK04615.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]4.4e-3678.9Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDRENAVSS
         DRENAVSS
Subjt:  GDRENAVSS

TrEMBL top hitse value%identityAlignment
A0A2P5AW87 Transcription factor UPBEAT-like protein1.6e-1554.13Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDRENAVS
        S D E+AVS
Subjt:  SGDRENAVS

A0A2P5ED64 Uncharacterized protein1.0e-1453.21Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK  +I    + RRT  R R   SR   A R+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDRENAVS
        S D E+AVS
Subjt:  SGDRENAVS

A0A314YX88 Uncharacterized protein8.8e-1450.47Show/hide
Query:  KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD
        K  +  ++ TRRT  R R GSR   A RR+  NGG   K  +  VSAKLE+L+SLI + S  G   +AEELFQ+TADYIVLL+ QV +LQRL+E YGS +
Subjt:  KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD

Query:  RENAVSS
        +E   ++
Subjt:  RENAVSS

A0A5A7UT08 Transcription factor UPBEAT1-like8.2e-3677.98Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDRENAVSS
         DRENAVSS
Subjt:  GDRENAVSS

A0A5D3BZU8 Transcription factor UPBEAT1-like2.2e-3678.9Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDRENAVSS
         DRENAVSS
Subjt:  GDRENAVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein4.6e-0740.62Show/hide
Query:  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFY-GSGDRENAV
        K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EELFQ+TA+YIV L+ QV VL++LIE Y  S D++  V
Subjt:  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFY-GSGDRENAV

AT5G39240.1 unknown protein7.6e-1041.67Show/hide
Query:  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRE
        RSR G R  +   N +  G       S KL++L+SL+P  S             ED      E+LFQ+TADYIV L+ QV VLQ+LIE YGS D++
Subjt:  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAA
AAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGT
TTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAA
AAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGT
TTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG
Protein sequenceShow/hide protein sequence
MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS