; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G010280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G010280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsister chromatid cohesion protein SCC4
Genome locationchr07:15594771..15595816
RNA-Seq ExpressionLsi07G010280
SyntenyLsi07G010280
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
InterPro domainsIPR019440 - Chromatid cohesion factor MAU2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031738038.1 sister chromatid cohesion protein SCC4 isoform X1 [Cucumis sativus]3.0e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

XP_031738039.1 sister chromatid cohesion protein SCC4 isoform X2 [Cucumis sativus]3.0e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

XP_031738040.1 sister chromatid cohesion protein SCC4 isoform X4 [Cucumis sativus]3.0e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

XP_031738041.1 sister chromatid cohesion protein SCC4 isoform X5 [Cucumis sativus]3.0e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

XP_038903798.1 sister chromatid cohesion protein SCC4 [Benincasa hispida]1.8e-8494.12Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSH+VNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQ+L+KGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYI SVEICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

TrEMBL top hitse value%identityAlignment
A0A0A0L4R7 Uncharacterized protein1.5e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

A0A1S3BJ17 LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog1.5e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPV+EVKTRLRIATLLLT+SHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ S EICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

A0A6J1DVU1 sister chromatid cohesion protein SCC43.6e-8391.76Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEK+GE+GKAIKCLEAICQS VSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS     SIPSC ELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQ+LYKGLDLTNS+GHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGY+ SVEICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

A0A6J1GBA4 sister chromatid cohesion protein SCC43.3e-8493.53Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEK+GELGKAIKCLEAICQS VSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQ+LYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSI+ALESGYI SVEICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

A0A6J1KHQ8 sister chromatid cohesion protein SCC41.5e-8494.12Show/hide
Query:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG
        MEAVAEGLWRLADYHEK+GELGKAIKCLEAICQS VSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS     SIPSCFELKCRAYSLLSQCYHLVG
Subjt:  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVG

Query:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        AIPPQKQ+LYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYI SVEICYPELQ+
Subjt:  AIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

SwissProt top hitse value%identityAlignment
B1H1Z8 MAU2 chromatid cohesion factor homolog5.9e-0628.03Show/hide
Query:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS
        + CL+A+ Q   S    +E +T L++ ++L  H+ N   A+ HLE++      IP   ++K  A SLLS+ Y    ++   K LL K + ++    +   
Subjt:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS

Query:  VKLWSCNFNSQLANALIIEGDYQNSISALESG
           W C    QLA    +E D  ++   L  G
Subjt:  VKLWSCNFNSQLANALIIEGDYQNSISALESG

B4ZIX8 MAU2 chromatid cohesion factor homolog1.3e-0528.36Show/hide
Query:  IKCLEAICQSPVSFFPV--VEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHE
        + CL+A+ Q    F P   +E +T L++ ++L  H+ N   A+ HLE++      IP   ++K  A SLLS+ Y    ++   K LL K + ++    + 
Subjt:  IKCLEAICQSPVSFFPV--VEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHE

Query:  LSVKLWSCNFNSQLANALIIEGDYQNSISALESG
             W C    QLA    +E D  ++   L  G
Subjt:  LSVKLWSCNFNSQLANALIIEGDYQNSISALESG

Q9D2X5 MAU2 chromatid cohesion factor homolog4.5e-0628.03Show/hide
Query:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS
        + CL+A+   P      +E +T L++ ++L  H+ N   A+SHLE++      IP   ++K  A SLLS+ Y    ++   K LL K + ++    +   
Subjt:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS

Query:  VKLWSCNFNSQLANALIIEGDYQNSISALESG
           W C    QLA    +E D  ++   L  G
Subjt:  VKLWSCNFNSQLANALIIEGDYQNSISALESG

Q9FGN7 Sister chromatid cohesion protein SCC46.6e-5862.79Show/hide
Query:  MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHL
        M+  AVAEGLW LAD+H+K GE+GK IKCLEAICQS +SF P+VEVK+RLR+A LLL +SHNVNHAKSHLERS     SIPS ++LK + YSLLS CYHL
Subjt:  MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHL

Query:  VGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        + + PPQ+ LL K L+L +S   ++S  LWSCNFNSQLAN  II+ D+ +S+SALESG++ +  IC+PELQ+
Subjt:  VGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV

Q9Y6X3 MAU2 chromatid cohesion factor homolog4.5e-0628.03Show/hide
Query:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS
        + CL+A+   P      +E +T L++ ++L  H+ N   A+SHLE++      IP   ++K  A SLLS+ Y    ++   K LL K + ++    +   
Subjt:  IKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGLDLTNSAGHELS

Query:  VKLWSCNFNSQLANALIIEGDYQNSISALESG
           W C    QLA    +E D  ++   L  G
Subjt:  VKLWSCNFNSQLANALIIEGDYQNSISALESG

Arabidopsis top hitse value%identityAlignment
AT5G51340.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.7e-5962.79Show/hide
Query:  MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHL
        M+  AVAEGLW LAD+H+K GE+GK IKCLEAICQS +SF P+VEVK+RLR+A LLL +SHNVNHAKSHLERS     SIPS ++LK + YSLLS CYHL
Subjt:  MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERS-----SIPSCFELKCRAYSLLSQCYHL

Query:  VGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV
        + + PPQ+ LL K L+L +S   ++S  LWSCNFNSQLAN  II+ D+ +S+SALESG++ +  IC+PELQ+
Subjt:  VGAIPPQKQLLYKGLDLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAGAGTCC
CGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATCTCGAGCGTTCTT
CTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTTTATAAGGGTCTT
GATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTATCAAAATTCAAT
CTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTCTAAGAGTATTGGAGCTTAACAAAAGTGCTCGAGAAGAGAGATACTTCATATACTCATTTGTCCCAAAACTCTGGTTTTCACAAATTAATCCCAAAAGTCTTTAA
CCCCTATTTTGGGCAAATTTTTTTCTGCCTTTTCCTGGATTGTCGTGTGAGCTTGGCGCCCCCTTTCCCAGAGACTATAAATTGGCAGCAATCTGATTGACACTCCTACT
GAAAAGAATCTGATGGATATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCAT
ATGCCAGAGTCCCGTGTCTTTCTTTCCAGTCGTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTACTCACTCATTCTCACAACGTCAATCATGCCAAATCCCATC
TCGAGCGTTCTTCTATTCCATCATGCTTCGAATTGAAGTGCCGGGCTTATAGCTTATTAAGCCAGTGTTATCATCTCGTCGGTGCTATTCCTCCCCAGAAACAGCTTCTT
TATAAGGGTCTTGATCTCACCAATTCTGCTGGTCACGAACTGTCAGTGAAGCTATGGTCTTGCAACTTCAATTCACAGCTAGCAAATGCTTTGATTATTGAAGGAGACTA
TCAAAATTCAATCTCTGCCTTGGAGTCGGGATACATACTTTCAGTTGAGATATGCTATCCTGAACTGCAGGTTGGCATCTAA
Protein sequenceShow/hide protein sequence
MDMEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVVEVKTRLRIATLLLTHSHNVNHAKSHLERSSIPSCFELKCRAYSLLSQCYHLVGAIPPQKQLLYKGL
DLTNSAGHELSVKLWSCNFNSQLANALIIEGDYQNSISALESGYILSVEICYPELQVGI