CuGenDBv2

Gene ID	Lsi07G010530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Genome location	chr07:15918634..15920220
RNA-Seq Expression	Lsi07G010530
Synteny	Lsi07G010530
Gene Ontology terms	GO:0048767 - root hair elongation (biological process) GO:0071816 - tail-anchored membrane protein insertion into ER membrane (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043529 - GET complex (cellular component) GO:0043621 - protein self-association (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596276.1 hypothetical protein SDJN03_09456, partial [Cucurbita argyrosperma subsp. sororia]

5.3e-38

88.51

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV
        QESR+K++K+SYGLY RVLLISKV IYI LVCWFWRASVATVPHHLVQPFG+FLSWRAGGTVND+VKVG+IPWLILSTRVSKFVCRV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV

XP_008448478.1 PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]

4.8e-39

89.77

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        QESRNKE+KTSYGLY +VLLISKV IYI LVCWFWRASVATVPHHLVQPFGKFLSW+AGGTVND+VKVG+IPWLILSTRVSKFVC+VV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

XP_022945757.1 uncharacterized protein LOC111449636 [Cucurbita moschata]

5.3e-38

88.51

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV
        QESR+K++K+SYGLY RVLLISKV IYI LVCWFWRASVATVPHHLVQPFG+FLSWRAGGTVND+VKVG+IPWLILSTRVSKFVCRV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV

XP_023539852.1 uncharacterized protein LOC111800404 [Cucurbita pepo subsp. pepo]

1.8e-38

89.66

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV
        QESR+KE+K+SYGLY RVLLISKV IYI LVCWFWRASVATVPHHLVQPFG+FLSWRAGGTVND+VKVG+IPWLILSTRVSKFVCRV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV

XP_038904813.1 uncharacterized protein LOC120091071 [Benincasa hispida]

4.8e-39

90.91

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        QESRNK+MKTSYGLYGRVLLISKVFIYI LVCWFWR SVATVP HLVQPFGKFLSWR GGTVND VKVG++PWLILSTRVSKFVCRVV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4T9 Uncharacterized protein

3.4e-38

88.64

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        QESRNKE+KTSYGLY +VLL+SKV I+I LVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVND+VKVG+IPWLILSTRVSKFV RVV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

A0A1S3BKE1 uncharacterized protein LOC103490650

2.3e-39

89.77

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        QESRNKE+KTSYGLY +VLLISKV IYI LVCWFWRASVATVPHHLVQPFGKFLSW+AGGTVND+VKVG+IPWLILSTRVSKFVC+VV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

A0A6J1CUP1 uncharacterized protein LOC111014752

2.9e-37

88.64

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        QESR+KEMKTSYGLY +VLL SKV IYIALV WFWRASVATVPHHLVQPFGK LSWRAGGTVND+VKVGVIPWLILSTRVSK+VC+VV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

A0A6J1G1T6 uncharacterized protein LOC111449636

2.6e-38

88.51

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV
        QESR+K++K+SYGLY RVLLISKV IYI LVCWFWRASVATVPHHLVQPFG+FLSWRAGGTVND+VKVG+IPWLILSTRVSKFVCRV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV

A0A6J1I7A9 uncharacterized protein LOC111470261

1.3e-37

87.36

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Query:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV
        QESR+K++K+SYGLY RVLLISKV IYI LVCWFWRASVATVPHHLVQPFG+FLSWRAGG VND+VKVG+IPWLILSTRVSKFVCRV
Subjt:  QESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRV

SwissProt top hits

e value

%identity

Alignment

Q1H5D2 Protein GET1

3.3e-22

57.47

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Query:  ESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        E  +KE+K SY +YG+ LL SKV IY+ LV  FWR  +A +   LVQPFG  LSW  GG +   V VG+IPWLILS RVSK+VCR V
Subjt:  ESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

Arabidopsis top hits

e value

%identity

Alignment

AT4G16444.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.3e-23

57.47

Show/hide

Query:  ESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV
        E  +KE+K SY +YG+ LL SKV IY+ LV  FWR  +A +   LVQPFG  LSW  GG +   V VG+IPWLILS RVSK+VCR V
Subjt:  ESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

Sequences

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CDS sequence

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mRNA sequence

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ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATGAAGACGTCCTATGGTTTATATGGTCGAGTACTGTTGATATCAAAGGTTTTTATATATATTGCACTGGT
TTGCTGGTTTTGGAGAGCTTCTGTTGCTACTGTACCTCATCACCTTGTGCAGCCATTTGGAAAGTTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTTTGTGAAGG
TTGGAGTTATACCTTGGTTGATACTGTCGACGAGGGTTAGCAAGTTTGTTTGTCGAGTCGTGTGAAGTTAAAAAGTGATTGAAGGTAATTGTGATGTAGAATGATACATC
ACCCACACGCTATGTACAATATTTGGCAACCGATATTTTCTTAATTTTCAGTTAGGGGGAGGCTGGAGAAGTTTTTACAGCCCCACCACTTTTTCTTCTTAAATTCGTTC
AAATGAGGTTCAGCATTCTTGTTGTTTTCCTTTTCTTTTTCCCGCATATATTTTCCCTTTCATTCCTTTTTTTTTTTTTGGAACACTTGGTCTCAGGTATCATTCATTAT
TGTTATTTTTATATAGAATTATGATATTCTATATATCGATTGGTTGCCTTGTGCGTAAGGT

Protein sequence

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MTLLPDQESRNKEMKTSYGLYGRVLLISKVFIYIALVCWFWRASVATVPHHLVQPFGKFLSWRAGGTVNDFVKVGVIPWLILSTRVSKFVCRVV

Lsi07G010530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome