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Lsi07G010600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G010600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionubiquitin domain-containing protein DSK2a-like
Genome locationchr07:15965444..15966584
RNA-Seq ExpressionLsi07G010600
SyntenyLsi07G010600
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function)
InterPro domainsIPR009060 - UBA-like superfamily
IPR015940 - Ubiquitin-associated domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052922.1 ubiquitin domain-containing protein DSK2a-like isoform X1 [Cucumis melo var. makuwa]4.8e-3597.53Show/hide
Query:  MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

TYK11376.1 ubiquitin domain-containing protein DSK2a-like isoform X1 [Cucumis melo var. makuwa]5.3e-3497.47Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

XP_004146171.1 ubiquitin domain-containing protein DSK2a [Cucumis sativus]2.0e-3396.2Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANN GLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

XP_008448485.1 PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X1 [Cucumis melo]5.3e-3497.47Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

XP_038903878.1 ubiquitin domain-containing protein DSK2a-like [Benincasa hispida]3.4e-3396.2Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANNTGLEMLMNMFGGLGAGSLAVPNRS+VPPEELYSTQLTQLQEMGFIDRQENIRALIAT+GNVHAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

TrEMBL top hitse value%identityAlignment
A0A0A0L1J6 Uncharacterized protein9.7e-3496.2Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANN GLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

A0A1S3BKE7 ubiquitin domain-containing protein DSK2a-like isoform X12.6e-3497.47Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

A0A5A7UB13 Ubiquitin domain-containing protein DSK2a-like isoform X12.3e-3597.53Show/hide
Query:  MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

A0A5D3CLT0 Ubiquitin domain-containing protein DSK2a-like isoform X12.6e-3497.47Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

A0A6J1L128 ubiquitin domain-containing protein DSK2a-like isoform X22.2e-3394.94Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAANN GLEMLMNMFGGLGAGSLA+PNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGN+HAAVERLLGN GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

SwissProt top hitse value%identityAlignment
G5EFF7 Ubiquilin1.8e-0848.72Show/hide
Query:  GAANNTGLEMLMNM--FGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGN
        GA +  GL  L N    GG    S A P    V PE+ Y++QL QLQ MGF DR  N+ AL AT G+++AAVERLL +
Subjt:  GAANNTGLEMLMNM--FGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGN

Q10169 Deubiquitination-protection protein dph13.6e-0942.86Show/hide
Query:  AANNTGLEMLMNMFG----------GLGAG-----SLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNL
        AA NT   +L N+ G          GLGAG     S   P +   PPEE Y+ QL+QL EMGF+D + N++AL  + GNV  A+E LL +L
Subjt:  AANNTGLEMLMNMFG----------GLGAG-----SLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNL

Q9NIF3 Ubiquilin1.0e-0838.55Show/hide
Query:  IGAANNTGLEMLMNMFGGLGA--------GSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLL
        +G           NMFGG+G          S   P  +  PPE+ +  QL QL+E+GF+DR  NI AL +T GN++ A++RLL
Subjt:  IGAANNTGLEMLMNMFGGLGA--------GSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLL

Q9SII8 Ubiquitin domain-containing protein DSK2b7.9e-2572.84Show/hide
Query:  GAA--NNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAA  NN GL++LMNMFG LGAG L+  N+S+VPPEE Y+TQL QLQEMGF DR ENIRAL+AT GNV+AAVERLLG++GQ
Subjt:  GAA--NNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

Q9SII9 Ubiquitin domain-containing protein DSK2a7.9e-2570.89Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        G ANN GL++LMNMFG LGAG L+  N+ +VPPEE ++TQL QLQEMGF DR ENIRAL+AT GNV+AAVERLLG++GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

Arabidopsis top hitse value%identityAlignment
AT2G17190.1 ubiquitin family protein5.6e-2670.89Show/hide
Query:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        G ANN GL++LMNMFG LGAG L+  N+ +VPPEE ++TQL QLQEMGF DR ENIRAL+AT GNV+AAVERLLG++GQ
Subjt:  GAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ

AT2G17200.1 ubiquitin family protein5.6e-2672.84Show/hide
Query:  GAA--NNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ
        GAA  NN GL++LMNMFG LGAG L+  N+S+VPPEE Y+TQL QLQEMGF DR ENIRAL+AT GNV+AAVERLLG++GQ
Subjt:  GAA--NNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGAGCTGCGAACAATACGGGGTTGGAGATGTTAATGAACATGTTTGGTGGACTTGGTGCTGGTAGTCTAGCCGTGCCCAACAGATCCGATGTACCGCCGGAAGA
ACTGTATTCTACGCAGCTCACACAGCTGCAAGAAATGGGATTCATTGACAGACAGGAGAACATACGAGCACTGATTGCCACTGCAGGAAATGTCCACGCCGCAGTTGAAC
GATTACTGGGGAATTTGGGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGGAGCTGCGAACAATACGGGGTTGGAGATGTTAATGAACATGTTTGGTGGACTTGGTGCTGGTAGTCTAGCCGTGCCCAACAGATCCGATGTACCGCCGGAAGA
ACTGTATTCTACGCAGCTCACACAGCTGCAAGAAATGGGATTCATTGACAGACAGGAGAACATACGAGCACTGATTGCCACTGCAGGAAATGTCCACGCCGCAGTTGAAC
GATTACTGGGGAATTTGGGGCAGTAGTGGATCGATCCCATTGGTAGTGTCGATGCATTTGATGTGGCCCCATCAAGTGCTGACAGCTGAGGTAAGTGACTTTGGAGGTGA
AATTCAAGTCGATTGAGTCCAAATTTTGGTATAGGAGCGGCAAAGTCGGGAATACGATCACCGAATTATAAGGTCTCACTCTTTCTCAGGTCCTTGGAGTTCTTGTAATA
CATATTCTCTTACATGATTACGAGTTGTCATATGAACTGTGTGGAAAATATGTTTATTTTTAGATGATATTTGTTGTTCTTTTCTTTTGGTTCATGCAATTGAGTTGATT
GGAGTTGCTCTTTTGCTAATATTAATTCCTATGAGTTCTGTCACTGTCGCTGGCGAGCACTACATGAATAGAATACGTAGAATTTAATTGAATTCACTTTTTGTTTTCTT
TCAGTTTACAGTTACACGTTTGATATCATTTTATTAAACATGAA
Protein sequenceShow/hide protein sequence
MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ