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Lsi07G010620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G010620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPoly(A) polymerase I
Genome locationchr07:15999581..16000429
RNA-Seq ExpressionLsi07G010620
SyntenyLsi07G010620
Gene Ontology termsGO:0001680 - tRNA 3'-terminal CCA addition (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0004652 - polynucleotide adenylyltransferase activity (molecular function)
InterPro domainsIPR002646 - Poly A polymerase, head domain
IPR043519 - Nucleotidyltransferase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596268.1 hypothetical protein SDJN03_09448, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4586.14Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFEAYLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

XP_022947617.1 uncharacterized protein LOC111451426 [Cucurbita moschata]3.3e-4586.14Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFEAYLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

XP_022971476.1 uncharacterized protein LOC111470184 [Cucurbita maxima]9.5e-4585.15Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFE YLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

XP_023540398.1 uncharacterized protein LOC111800784 [Cucurbita pepo subsp. pepo]3.3e-4586.14Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFEAYLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

XP_038904059.1 uncharacterized protein LOC120090455 [Benincasa hispida]8.6e-4688.35Show/hide
Query:  PVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSI
        P DAANN MPKWNKI+GRAFGITRSMIPSSSW VLK+L +KGFEAYLVGGCVRDLLLNRVPKDFDVITTAGL+QI KLFHRA I+GRRFPIC VNIKGSI
Subjt:  PVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSI

Query:  TEV
        TEV
Subjt:  TEV

TrEMBL top hitse value%identityAlignment
A0A0A0L3K6 Uncharacterized protein1.1e-4184Show/hide
Query:  AANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        AAN DMPKWNKINGRAFG+TRSMIPSSSW VL+VLH +GFEAYLVGGCVRDLLL RVPKDFDVITTAGL QI  LF R++I+GRRFPICMV+I+GSITEV
Subjt:  AANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

A0A6J1CVT5 uncharacterized protein LOC111014843 isoform X42.6e-4079.21Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        +AAN  M KWNK++ RAFGI RSMIP SSW+VL++L  KGFE YLVGGCVRDL+LNRVPKDFDVITTAGL+QI KLFHRAQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

A0A6J1CW57 uncharacterized protein LOC111014843 isoform X22.6e-4079.21Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        +AAN  M KWNK++ RAFGI RSMIP SSW+VL++L  KGFE YLVGGCVRDL+LNRVPKDFDVITTAGL+QI KLFHRAQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

A0A6J1G6Y5 uncharacterized protein LOC1114514261.6e-4586.14Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFEAYLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

A0A6J1I3F4 uncharacterized protein LOC1114701844.6e-4585.15Show/hide
Query:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE
        DA+N DMPKWNK++GRAFGI+RSMIPSSSW+VLK+LHNKGFE YLVGGCVRDLLLNR PKDFDVITTAGL+QI KLFH AQI+GRRFPICMVNIKGS+ E
Subjt:  DAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITE

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
P0ABF2 Poly(A) polymerase I5.8e-1342.55Show/hide
Query:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        P+   I      I+R  I  ++  V+  L+  G+EA+LVGG VRDLLL + PKDFDV T A  +Q+ KLF   +++GRRF +  V     I EV
Subjt:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

P0ABF3 Poly(A) polymerase I5.8e-1342.55Show/hide
Query:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        P+   I      I+R  I  ++  V+  L+  G+EA+LVGG VRDLLL + PKDFDV T A  +Q+ KLF   +++GRRF +  V     I EV
Subjt:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

P44439 Poly(A) polymerase I2.0e-1342.39Show/hide
Query:  NKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHR-AQIIGRRFPICMVNIKGSITEV
        N I    F I+      ++  V++ L  +GFEAY+VGGC+RDLLL + PKDFDV T A  +QI  +F R  +++GRRF +  +     I EV
Subjt:  NKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHR-AQIIGRRFPICMVNIKGSITEV

Q8Z9C3 Poly(A) polymerase I2.6e-1348.78Show/hide
Query:  ITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        I+R  I  ++  VL  L+  G+EAYLVGG VRDLLL + PKDFDV T A   Q+ KLF   +++GRRF +  V     I EV
Subjt:  ITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

Q8ZRQ8 Poly(A) polymerase I2.6e-1348.78Show/hide
Query:  ITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        I+R  I  ++  VL  L+  G+EAYLVGG VRDLLL + PKDFDV T A   Q+ KLF   +++GRRF +  V     I EV
Subjt:  ITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

Arabidopsis top hitse value%identityAlignment
AT1G28090.1 Polynucleotide adenylyltransferase family protein2.3e-2859.18Show/hide
Query:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        +  MP W K++   FGI RSMIP S+ +VL  L  KGF+ YLVGGCVRDL+L+R+PKDFDVITTA LK++ K+F   QI+GRRFPIC V +   I EV
Subjt:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

AT1G28090.2 Polynucleotide adenylyltransferase family protein2.3e-2859.18Show/hide
Query:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        +  MP W K++   FGI RSMIP S+ +VL  L  KGF+ YLVGGCVRDL+L+R+PKDFDVITTA LK++ K+F   QI+GRRFPIC V +   I EV
Subjt:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

AT1G28090.3 Polynucleotide adenylyltransferase family protein2.3e-2859.18Show/hide
Query:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        +  MP W K++   FGI RSMIP S+ +VL  L  KGF+ YLVGGCVRDL+L+R+PKDFDVITTA LK++ K+F   QI+GRRFPIC V +   I EV
Subjt:  NNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV

AT2G17580.1 Polynucleotide adenylyltransferase family protein1.2e-3263.46Show/hide
Query:  IPVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGS
        I  D  + D  KW K+     GI  SMIP SS  VL++L  +GF+AYLVGGCVRDL+LNRVPKD+DVITTA LKQI +LFHRAQ+IG+RFPIC V + GS
Subjt:  IPVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGS

Query:  ITEV
        I EV
Subjt:  ITEV

AT3G48830.1 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein6.2e-2652.13Show/hide
Query:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV
        P+W K+N +  GIT SMI   + IVL  L +KG++ YLVGGCVRDL+L R PKDFD++T+A L+++ + F R +IIG++FPIC V+I   + EV
Subjt:  PKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCACCGTGTTCCATACCTGTAGATGCAGCCAACAACGACATGCCCAAATGGAATAAAATTAATGGACGGGCTTTTGGGATCACTCGTTCAATGATCCCATCTTCATCATG
GATAGTCTTGAAAGTTCTTCATAATAAAGGGTTTGAAGCCTATTTGGTGGGTGGATGTGTGAGAGACTTACTCCTAAACAGAGTACCAAAAGACTTTGATGTGATTACCA
CAGCTGGACTTAAACAGATCTGCAAACTATTTCATCGGGCACAAATTATTGGGCGTCGTTTTCCTATTTGTATGGTCAATATTAAAGGCTCCATTACTGAGGTAGTGATG
CATTTTCATTGGACTACTTAA
mRNA sequenceShow/hide mRNA sequence
GCACCGTGTTCCATACCTGTAGATGCAGCCAACAACGACATGCCCAAATGGAATAAAATTAATGGACGGGCTTTTGGGATCACTCGTTCAATGATCCCATCTTCATCATG
GATAGTCTTGAAAGTTCTTCATAATAAAGGGTTTGAAGCCTATTTGGTGGGTGGATGTGTGAGAGACTTACTCCTAAACAGAGTACCAAAAGACTTTGATGTGATTACCA
CAGCTGGACTTAAACAGATCTGCAAACTATTTCATCGGGCACAAATTATTGGGCGTCGTTTTCCTATTTGTATGGTCAATATTAAAGGCTCCATTACTGAGGTAGTGATG
CATTTTCATTGGACTACTTAA
Protein sequenceShow/hide protein sequence
APCSIPVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEVVM
HFHWTT