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Lsi07G010630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G010630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSplicing factor 3B subunit 6-like protein
Genome locationchr07:16002404..16003142
RNA-Seq ExpressionLsi07G010630
SyntenyLsi07G010630
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005684 - U2-type spliceosomal complex (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2622298.1 unnamed protein product [Spirodela intermedia]5.1e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
KAG1334385.1 Sucrose synthase 1 [Cocos nucifera]5.1e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
OVA05663.1 RNA recognition motif domain [Macleaya cordata]5.1e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
RWR74803.1 splicing factor 3B subunit 6-like protein [Cinnamomum micranthum f. kanehirae]5.1e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
XP_012838296.1 PREDICTED: splicing factor 3B subunit 6-like protein [Erythranthe guttata]1.8e-1182.22Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQG+
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
TrEMBL top hitse value%identityAlignment
A0A022R8B2 RRM domain-containing protein8.5e-1282.22Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQG+
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
A0A1U7ZIF0 splicing factor 3B subunit 6-like protein2.5e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
A0A6I9Q894 splicing factor 3B subunit 6-like protein2.5e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
A0A6I9REM4 splicing factor 3B subunit 6-like protein2.5e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
B3TLZ0 RNA binding protein2.5e-1174Show/hide
Query:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +NKDTRGT FVVY+DI DAKT VDHLS FNV NRYLIVLYYQQ +  + V
Subjt:  SNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
SwissProt top hitse value%identityAlignment
P59708 Splicing factor 3B subunit 66.5e-0959.57Show/hide
Query:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +TRGT +VVY+DI DAK   DHLS FNV NRYL+VLYY   +  Q +
Subjt:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
Q8ITY4 Splicing factor 3B subunit 6-like protein5.9e-1065.96Show/hide
Query:  GNSAYSNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQ
        GN+A    +TRGT FVVY+DI DAKT  +HLS +NV NRYL+VLYYQ
Subjt:  GNSAYSNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQ
Q9FMP4 Splicing factor 3B subunit 6-like protein1.5e-1070.45Show/hide
Query:  NKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
        +K T+GT FVVY+DI DAK  VDHLS FNV NRYLIVLYYQ  +
Subjt:  NKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
Q9VRV7 Splicing factor 3B subunit 67.6e-1069.05Show/hide
Query:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
        +TRGT FVVY+DI DAK   DHLS FNV NRYL+VLYYQ  +
Subjt:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
Q9Y3B4 Splicing factor 3B subunit 66.5e-0959.57Show/hide
Query:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
        +TRGT +VVY+DI DAK   DHLS FNV NRYL+VLYY   +  Q +
Subjt:  DTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV
Arabidopsis top hitse value%identityAlignment
AT5G12190.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1170.45Show/hide
Query:  NKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ
        +K T+GT FVVY+DI DAK  VDHLS FNV NRYLIVLYYQ  +
Subjt:  NKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAATCTTTCTCCTTCCATCACAAGATTGGCTAAGGTAATCGTGAGGAAGTTGAACAAAAAAGACATACAAAATTTTCGGCAAGTATGGGGCAATTCGGCATATTC
GAACAAGGATACTAGGGGTACTGGCTTTGTTGTTTACAAGGATATCATTGATGCTAAGACGGTGGTGGATCACCTCTCCAAGTTCAACGTTCCTAATCGATATTTGATCG
TGTTGTACTACCAGCAGGGCCAAGATGAGCAAAATGTT
mRNA sequenceShow/hide mRNA sequence
CAAGAATTCTGCGTGGCTTAAGAATTGCAGCTCGTTTGGGTTTGTCACTCTCAAAGGAAACTGAGACTGCGATGCGTAATCTTTCTCCTTCCATCACAAGATTGGCTAAG
GTAATCGTGAGGAAGTTGAACAAAAAAGACATACAAAATTTTCGGCAAGTATGGGGCAATTCGGCATATTCGAACAAGGATACTAGGGGTACTGGCTTTGTTGTTTACAA
GGATATCATTGATGCTAAGACGGTGGTGGATCACCTCTCCAAGTTCAACGTTCCTAATCGATATTTGATCGTGTTGTACTACCAGCAGGGCCAAGATGAGCAAAATGTT
Protein sequenceShow/hide protein sequence
MRNLSPSITRLAKVIVRKLNKKDIQNFRQVWGNSAYSNKDTRGTGFVVYKDIIDAKTVVDHLSKFNVPNRYLIVLYYQQGQDEQNV