; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G011020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G011020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncold shock domain-containing protein 3
Genome locationchr07:16416031..16416840
RNA-Seq ExpressionLsi07G011020
SyntenyLsi07G011020
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.6e-12792.96Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGG    GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG-GAGACYNCGGFGHLARDCNRGGA
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG G G CYNCGGFGHLARDCNRGGA
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG-GAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGS   GGGGGGGCFNCGEYGH+ARDCQNESR S GGGGRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]8.7e-13496.35Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGGGG GACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDA
        GAGGGS  GGGGGGGGCFNCGEYGHIARDCQNESRGS GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDA

XP_008448549.1 PREDICTED: cold shock domain-containing protein 3 [Cucumis melo]4.3e-13395.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+  GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]9.3e-12893.33Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGG    GGRGG GGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG-GAGACYNCGGFGHLARDCNRGGA
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDC R SNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG G G CYNCGGFGHLARDCNRGGA
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG-GAGACYNCGGFGHLARDCNRGGA

Query:  GGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAP
        GGGS GGGGGGGGGCFNCGEYGH+ARDCQNESR S GGGGRFGGGGGGG+NTCFNCGKSGHFARECPDAP
Subjt:  GGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]6.2e-13294.55Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGG CYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGGGGAGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGG---GGGGGSNTCFNCGKSGHFARECPDAP
        GAGGGS     GGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGG   GGGGG NTCFNCGKSGHFARECPDAP
Subjt:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGG---GGGGGSNTCFNCGKSGHFARECPDAP

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein4.2e-13496.35Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTR SNRGGGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGGGG GACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDA
        GAGGGS  GGGGGGGGCFNCGEYGHIARDCQNESRGS GGGGGRF  GGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGS-GGGGGRF--GGGGGGGSNTCFNCGKSGHFARECPDA

A0A1S3BKK1 cold shock domain-containing protein 32.1e-13395.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+  GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A5D3CJR2 Cold shock domain-containing protein 32.1e-13395.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+  GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA

A0A6J1HNK3 cold shock domain-containing protein 3-like2.9e-12794.01Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG GG  GACYNCGGFGHLARDCNRGGAG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD
        GGS    GGGGG CFNCGEYGH+ARDCQNESRGSGGGGGRF   GGGG+NTCFNCGKSGHFARECPD
Subjt:  GGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPD

E5RDD6 Cold-shock DNA-binding family protein2.1e-13395.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTR SNR GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+  GACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA--GACYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
        NRGGAGGGS   GGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 12.2e-4751.03Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G  RGG G G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG

Query:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPR-----GNSGGGGGGGAGACYNCGGF
        +     G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC +     G+  G   GG   CY CG  
Subjt:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPR-----GNSGGGGGGGAGACYNCGGF

Query:  GHLARDCNRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC
        GH ARDC +  A  G+   GGGG G C++CG  GHIARDC   +  SRG    GG G         G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC

P27484 Glycine-rich protein 26.5e-3948.7Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++        GG GG GG GG G
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRG
        GGGYG           G+ G GGGG               R  +RG GGG GG                    GGGGG G G+ Y  GG G+        
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRF-GGGGGGGSNTCFNCGKSGHFAREC
        G GGG GGGG GGG GCF CGE GH ARDC     G GGGGGRF GGGGGGG   C+ CG+ GHFAREC
Subjt:  GAGGGSGGGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRF-GGGGGGGSNTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 45.0e-3146.88Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGF
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+        GG  GGRGG GGGGG     
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGF

Query:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS
           RGG R  G+ G G GG               R S   GGGGG   CF CGE GH+AR+C +G  G  GGGG G                R G+GG  
Subjt:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGGGGCFNCGEYGHIARDC
        GGGGGGGG  C++CGE GH ARDC
Subjt:  GGGGGGGGGGCFNCGEYGHIARDC

Q41188 Cold shock protein 23.8e-3148.92Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGY
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN   + GG  GGRGG GGG GGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGY

Query:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGG
        G GG  GG         GGGG                   RGGGG GG  C+ CGE GH+ARDC  G  GGG GGG G     GG+G        GG  G
Subjt:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGGGGGCFNCGEYGHIARDCQNESR
        G G GGGGGGG C++CGE GH ARDC +  R
Subjt:  GSGGGGGGGGGGCFNCGEYGHIARDCQNESR

Q94C69 Cold shock domain-containing protein 37.1e-5452.15Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G         
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG---GGGGGAGA----CYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG   GGGGG G+    CY CG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG---GGGGGAGA----CYNCG

Query:  GFGHLARDCNRGGAGGGSGG-----------------------GGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFA
        G GH ARDC + G G   GG                       GGGGGG  C+ CG  GH+ARDC  + RGSG        GGGGGSN CF CGK GHFA
Subjt:  GFGHLARDCNRGGAGGGSGG-----------------------GGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFA

Query:  REC
        REC
Subjt:  REC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 35.0e-5552.15Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G         
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG---GGGGGAGA----CYNCG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC RG SGG   GGGGG G+    CY CG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG---GGGGGAGA----CYNCG

Query:  GFGHLARDCNRGGAGGGSGG-----------------------GGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFA
        G GH ARDC + G G   GG                       GGGGGG  C+ CG  GH+ARDC  + RGSG        GGGGGSN CF CGK GHFA
Subjt:  GFGHLARDCNRGGAGGGSGG-----------------------GGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFA

Query:  REC
        REC
Subjt:  REC

AT2G21060.1 glycine-rich protein 2B3.5e-3246.88Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGF
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+        GG  GGRGG GGGGG     
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGF

Query:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS
           RGG R  G+ G G GG               R S   GGGGG   CF CGE GH+AR+C +G  G  GGGG G                R G+GG  
Subjt:  GGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGGGGCFNCGEYGHIARDC
        GGGGGGGG  C++CGE GH ARDC
Subjt:  GGGGGGGGGGCFNCGEYGHIARDC

AT4G36020.1 cold shock domain protein 11.6e-4851.03Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G  RGG G G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG

Query:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPR-----GNSGGGGGGGAGACYNCGGF
        +     G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC +     G+  G   GG   CY CG  
Subjt:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASN---RGGGGGGGGGCFTCGEVGHLARDCPR-----GNSGGGGGGGAGACYNCGGF

Query:  GHLARDCNRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC
        GH ARDC +  A  G+   GGGG G C++CG  GHIARDC   +  SRG    GG G         G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGGSGGGGGGGGGGCFNCGEYGHIARDC---QNESRG--SGGGGGRF-------GGGGGGGSNTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 22.7e-3248.92Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGY
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN   + GG  GGRGG GGG GGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGGRGGRGGGGGGGY

Query:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGG
        G GG  GG         GGGG                   RGGGG GG  C+ CGE GH+ARDC  G  GGG GGG G     GG+G        GG  G
Subjt:  GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGGGGGCFNCGEYGHIARDCQNESR
        G G GGGGGGG C++CGE GH ARDC +  R
Subjt:  GSGGGGGGGGGGCFNCGEYGHIARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGTTACAGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGAT
AGGCGGAATGGGAACAGTGGGGCCGGTGGGGGTGGGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCGGCGGTGGCGGCGG
AGGTGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGTGGCGGAGGTGGAGGCGGCGGTGCCGGGGCTTGCTATAATT
GTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATAT
GGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGCGGCGGAAGATTTGGTGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAA
ATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAAGGCTTCGGCTTCATCAAGCCAGATGTAGAAGGTCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGTTACAGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGCAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGGGGAGGTGAT
AGGCGGAATGGGAACAGTGGGGCCGGTGGGGGTGGGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCGAGAGACTGTACTCGTGCTAGTAACCGCGGCGGTGGCGGCGG
AGGTGGCGGTGGGTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGTGGCGGAGGTGGAGGCGGCGGTGCCGGGGCTTGCTATAATT
GTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAATAT
GGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGCGGTGGCGGCGGAAGATTTGGTGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAA
ATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCTTGA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGD
RRNGNSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGGCFNCGEY
GHIARDCQNESRGSGGGGGRFGGGGGGGSNTCFNCGKSGHFARECPDAP