; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G011270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G011270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCotton fiber protein
Genome locationchr07:16727171..16727826
RNA-Seq ExpressionLsi07G011270
SyntenyLsi07G011270
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052985.1 hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa]1.3e-1178Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
        G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
KAG6577759.1 hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia]8.8e-1376Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
        G+C+DD+DQRA+IFIDNFRRQL LERQ SL+L YYG+NSSE +YE RSPP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
KAG7015798.1 hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1378Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
        G+C+DD+DQRA+IFIDNFRRQL LERQ SL+LRYYG+NSSE +YE RSPP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
XP_011652707.1 uncharacterized protein LOC105435054 [Cucumis sativus]7.4e-1279.59Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP
        G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP
XP_022145292.1 uncharacterized protein LOC111014780 [Momordica charantia]2.2e-1173.08Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP
        GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP
TrEMBL top hitse value%identityAlignment
A0A0A0L4Z8 Uncharacterized protein3.6e-1279.59Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP
        G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP
A0A0A0L6A3 Uncharacterized protein1.5e-1074.07Show/hide
Query:  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP
        +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Subjt:  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP
A0A2C9UBN9 Uncharacterized protein2.3e-0675.61Show/hide
Query:  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEY
        +DDIDQRAEIFI+NFRRQL LERQ SLQLRYY  NS   +Y
Subjt:  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEY
A0A5D3CHZ5 Uncharacterized protein6.1e-1278Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
        G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP
A0A6J1CW64 uncharacterized protein LOC1110147801.0e-1173.08Show/hide
Query:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP
        GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Subjt:  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G57510.1 unknown protein2.5e-0553.33Show/hide
Query:  DDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP
        +DID +AE+FI NF RQL++ERQ SL+L+Y   N+    Y  RSP
Subjt:  DDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGA
CGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAA
ATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGA
CGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAA
ATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA
Protein sequenceShow/hide protein sequence
MDVQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG