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Lsi07G011410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G011410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein PAM68, chloroplastic
Genome locationchr07:16873471..16875635
RNA-Seq ExpressionLsi07G011410
SyntenyLsi07G011410
Gene Ontology termsGO:0010207 - photosystem II assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR021855 - PAM68-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146119.1 protein PAM68, chloroplastic isoform X2 [Cucumis sativus]8.2e-5164.74Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI-----------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDED
        MAAIAGSLNLPL+PSNLP  RI                                               KGFGPA +++KTKKT+REGSED+D   E+E+
Subjt:  MAAIAGSLNLPLSPSNLPSPRI-----------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDED

Query:  EDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        ++EEEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDP+REGSLL
Subjt:  EDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

XP_008448605.1 PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]1.1e-5064.77Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE--
        MAAIAGSLNLPL+PSNLP  RI                                             KGFGPAP+++K KKTK EG ED+D DEDE+E  
Subjt:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE--

Query:  ------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
              EEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  ------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

XP_011650314.1 protein PAM68, chloroplastic isoform X1 [Cucumis sativus]1.1e-5064.4Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI------------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDE
        MAAIAGSLNLPL+PSNLP  RI                                                KGFGPA +++KTKKT+REGSED+D   E+E
Subjt:  MAAIAGSLNLPLSPSNLPSPRI------------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDE

Query:  DEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        +++EEEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDP+REGSLL
Subjt:  DEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

XP_038877162.1 protein PAM68, chloroplastic isoform X1 [Benincasa hispida]4.2e-5570.81Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEE
        MAAI+GSLNLPL+PSNL SPRI                                             KGFGPAP+R+K KKTKREGSEDE  DEDEDEEE
Subjt:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEE

Query:  EEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        EEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  EEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

XP_038877163.1 protein PAM68, chloroplastic isoform X2 [Benincasa hispida]2.8e-5194.17Show/hide
Query:  RIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALL
        R KGFGPAP+R+K KKTKREGSEDE  DEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALL
Subjt:  RIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALL

Query:  GVSYGIVSSSWDPMREGSLL
        GVSYGIVSSSWDPMREGSLL
Subjt:  GVSYGIVSSSWDPMREGSLL

TrEMBL top hitse value%identityAlignment
A0A0A0L507 Uncharacterized protein4.0e-5164.74Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI-----------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDED
        MAAIAGSLNLPL+PSNLP  RI                                               KGFGPA +++KTKKT+REGSED+D   E+E+
Subjt:  MAAIAGSLNLPLSPSNLPSPRI-----------------------------------------------KGFGPAPKRRKTKKTKREGSEDED---EDED

Query:  EDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        ++EEEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDP+REGSLL
Subjt:  EDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

A0A1S3BKQ0 protein PAM68, chloroplastic isoform X16.8e-5164.43Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI----------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE-
        MAAIAGSLNLPL+PSNLP  RI                                              KGFGPAP+++K KKTK EG ED+D DEDE+E 
Subjt:  MAAIAGSLNLPLSPSNLPSPRI----------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE-

Query:  -------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
               EEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  -------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

A0A1S3BKY8 protein PAM68, chloroplastic isoform X25.2e-5164.77Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE--
        MAAIAGSLNLPL+PSNLP  RI                                             KGFGPAP+++K KKTK EG ED+D DEDE+E  
Subjt:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDE--

Query:  ------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
              EEEEGGVIPEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  ------EEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

A0A6J1CUC6 protein PAM68, chloroplastic8.8e-5167.74Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEE
        MAAIAGSLNLPL+PSNLPS RI                                             KGFGPAPK+RK KK++    EDEDEDEDEDE+E
Subjt:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEE

Query:  E-EGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        E EGGVIPEVVTNRM+SRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  E-EGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

A0A6J1GB37 protein PAM68, chloroplastic1.2e-4763.83Show/hide
Query:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREG---SEDEDEDEDED
        MAAI GSLNLPL+PS LPS  I                                             KGFGPAP+++K KKTK  G    E EDE+++E+
Subjt:  MAAIAGSLNLPLSPSNLPSPRI---------------------------------------------KGFGPAPKRRKTKKTKREG---SEDEDEDEDED

Query:  EEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
        EEEE+ GVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL
Subjt:  EEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLL

SwissProt top hitse value%identityAlignment
O49668 Protein PAM68, chloroplastic6.5e-4373.81Show/hide
Query:  KGFGPAPKRRKTKKTKR--------EGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFF
        KGFGP PK  KTKK+K+        E  +DEDED+D++E+E E GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF F
Subjt:  KGFGPAPKRRKTKKTKR--------EGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFF

Query:  FGSALLGVSYGIVSSSWDPMREGSLL
        FG+AL GVSYGIVSSSWDP+REGSLL
Subjt:  FGSALLGVSYGIVSSSWDPMREGSLL

Q9LTD9 Uncharacterized protein PAM68-like2.9e-0632.03Show/hide
Query:  LSPSNLPSPRIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVS
        L P+N P    K        + ++ +++ G  D D ++D          IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +
Subjt:  LSPSNLPSPRIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVS

Query:  FFFFGSALLGVSYGIVSSSWDPMREGSL
           FGS+ LG++YG +S++ DP +  SL
Subjt:  FFFFGSALLGVSYGIVSSSWDPMREGSL

Arabidopsis top hitse value%identityAlignment
AT4G19100.1 Protein of unknown function (DUF3464)4.6e-4473.81Show/hide
Query:  KGFGPAPKRRKTKKTKR--------EGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFF
        KGFGP PK  KTKK+K+        E  +DEDED+D++E+E E GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF F
Subjt:  KGFGPAPKRRKTKKTKR--------EGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFF

Query:  FGSALLGVSYGIVSSSWDPMREGSLL
        FG+AL GVSYGIVSSSWDP+REGSLL
Subjt:  FGSALLGVSYGIVSSSWDPMREGSLL

AT5G52780.1 Protein of unknown function (DUF3464)2.0e-0732.03Show/hide
Query:  LSPSNLPSPRIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVS
        L P+N P    K        + ++ +++ G  D D ++D          IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +
Subjt:  LSPSNLPSPRIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVS

Query:  FFFFGSALLGVSYGIVSSSWDPMREGSL
           FGS+ LG++YG +S++ DP +  SL
Subjt:  FFFFGSALLGVSYGIVSSSWDPMREGSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTTCGCCTTCAAACCTTCCATCACCCCGCATTAAGGGATTCGGACCAGCTCCAAAGAGGAGGAAGACAAAGAAAAC
AAAAAGAGAAGGAAGCGAAGACGAGGATGAGGATGAAGACGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGAATGATAAGTAGAATGG
GATTTTCAGTGGGGATTCCATTGTTGATAGGACTTCTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTC
TCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGTATTGTTTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTG
mRNA sequenceShow/hide mRNA sequence
TTTTTTCTTCTTGACACGTGGGGCAGCCGCATTGGTCCGCCAAATGCTTTAGGAATCCAAACAATTTTCCGCCAATTCTACGCAAAATTTTGATTGCTAACCAAAAGAAA
ACCTTATCCTCTTTCACTGCTCTCTTCCATGGCGTCCGTCCCTGCTTCGCGCAGTGAAGACAAAATGTAAGAAACGAGACGACTGTGTTTCAGTTTCAGTGAAAAACCCT
AATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTTCGCCTTCAAACCTTCCATCACCCCGCATTAAGGGATTCGGACCAGCTCCAAAGAGGAGGAAGACAAAGAAAA
CAAAAAGAGAAGGAAGCGAAGACGAGGATGAGGATGAAGACGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGAATGATAAGTAGAATG
GGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTCTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGT
CTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGTATTGTTTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTG
Protein sequenceShow/hide protein sequence
MAAIAGSLNLPLSPSNLPSPRIKGFGPAPKRRKTKKTKREGSEDEDEDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIV
SFFFFGSALLGVSYGIVSSSWDPMREGSLL