CuGenDBv2

Gene ID	Lsi07G011700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SANT domain-containing protein
Genome location	chr07:17163711..17179360
RNA-Seq Expression	Lsi07G011700
Synteny	Lsi07G011700
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domains	IPR044847 - Transcription repressor KANADI

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053021.1 putative transcription factor KAN2 isoform X1 [Cucumis melo var. makuwa]

1.9e-77

87.63

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG
        MELFPAQPDLSLQISPPNSSTNSKPSSN+NWR QPISSISPQ+PLDL+FWN+NN NN NK  PS NNSSSNSSNFDP++ NSSNFL HHFPPT    NGG
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG

Query:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR
         AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG GSQF YNG RSRFLARFPAKRSIRAPRMR
Subjt:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR

XP_004150668.1 probable transcription factor KAN2 isoform X1 [Cucumis sativus]

6.4e-73

84.57

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS
        MELFPAQPDLSLQISPPNSSTNSKPS N+NWR QPISSISPQ+PLDL+FWNNN  NNNK  PS +NSSSNSSNFDP++ NSSNFLPHHFPP  A   GG 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS

Query:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR
        A LFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG    GSQF YN  RSRFLARFPAKRSIRAPRMR
Subjt:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR

XP_008465527.1 PREDICTED: probable transcription factor KAN2 [Cucumis melo]

1.9e-77

87.63

Show/hide

Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG
        MELFPAQPDLSLQISPPNSSTNSKPSSN+NWR QPISSISPQ+PLDL+FWN+NN NN NK  PS NNSSSNSSNFDP++ NSSNFL HHFPPT    NGG
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG

Query:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR
         AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG GSQF YNG RSRFLARFPAKRSIRAPRMR
Subjt:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR

XP_011650330.1 probable transcription factor KAN2 isoform X2 [Cucumis sativus]

6.4e-73

84.57

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS
        MELFPAQPDLSLQISPPNSSTNSKPS N+NWR QPISSISPQ+PLDL+FWNNN  NNNK  PS +NSSSNSSNFDP++ NSSNFLPHHFPP  A   GG 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS

Query:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR
        A LFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG    GSQF YN  RSRFLARFPAKRSIRAPRMR
Subjt:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR

XP_023539511.1 probable transcription factor KAN2 [Cucurbita pepo subsp. pepo]

4.5e-58

72.68

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA
        MELFPAQPDLSLQISPPNSSTNSKPSSN  WRRQ PISS+  QNPLDLV WNN        LPS N SSS+SSNFDP     N  +SS+FL  HFP  A 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA

Query:  SANGGSA---GLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR
        +ANGG A   GLFHRHLHDLH QGLGFLRPIRGIPVYQN PSSSSSSS SYPIFG  GGG GG G QF YN   RSRFL RFP KR++RAPRMR
Subjt:  SANGGSA---GLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L171 SANT domain-containing protein

3.1e-73

84.57

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS
        MELFPAQPDLSLQISPPNSSTNSKPS N+NWR QPISSISPQ+PLDL+FWNNN  NNNK  PS +NSSSNSSNFDP++ NSSNFLPHHFPP  A   GG 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGS

Query:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR
        A LFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG    GSQF YN  RSRFLARFPAKRSIRAPRMR
Subjt:  AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGG---SGSQFGYNGFRSRFLARFPAKRSIRAPRMR

A0A1S3CP02 probable transcription factor KAN2

9.4e-78

87.63

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG
        MELFPAQPDLSLQISPPNSSTNSKPSSN+NWR QPISSISPQ+PLDL+FWN+NN NN NK  PS NNSSSNSSNFDP++ NSSNFL HHFPPT    NGG
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG

Query:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR
         AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG GSQF YNG RSRFLARFPAKRSIRAPRMR
Subjt:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR

A0A5A7UHK5 Putative transcription factor KAN2 isoform X1

9.4e-78

87.63

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG
        MELFPAQPDLSLQISPPNSSTNSKPSSN+NWR QPISSISPQ+PLDL+FWN+NN NN NK  PS NNSSSNSSNFDP++ NSSNFL HHFPPT    NGG
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNN-NKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGG

Query:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR
         AGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS SSSSSSYPIFGGSGGGGGG GSQF YNG RSRFLARFPAKRSIRAPRMR
Subjt:  SAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSS-SSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMR

A0A6J1E6C4 probable transcription factor KAN2

2.4e-57

72.68

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA
        MELFPAQPDLSLQISPPNSSTNSKPSSN  WRRQ PISS+  QNPLDLV WNN        LPS N SSS+SSNFDP     N  +SS+FL  HF PTA 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA

Query:  SANGGSA---GLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR
        + NGG A   GLFHRHLHDLH QGLGFLRPIRGIPVYQN PSSSSSSS SYPIFG  GGG GG G QF YN   RSRFL RFP KR++RAPRMR
Subjt:  SANGGSA---GLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR

A0A6J1KUZ9 probable transcription factor KAN2

2.4e-57

72.68

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA
        MELFPAQPDLSLQISPPNSSTNSKPSSN  WRRQ PISS+  QNPLDLV WNN        LPS N SSS+SSNFDP     N  +SS+FL  HF PTA 
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQ-PISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDP-----NIPNSSNFLPHHFPPTAA

Query:  SANG---GSAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR
        +ANG   G+ GLFHRHLHDLH QGLGFLRPIRGIPVYQN PS SSSSS SYPIFG  GGG GGSG QF YN   RSRFL RFP KR++RAPRMR
Subjt:  SANG---GSAGLFHRHLHDLHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYN-GFRSRFLARFPAKRSIRAPRMR

SwissProt top hits

e value

%identity

Alignment

Q9C616 Probable transcription factor KAN2

2.7e-13

37.84

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFD----PNIPNSSNFLPHHFP---PTA
        MELFPAQPDLSLQISPP    NSKPSS T  RR+  +       LDL FW     +    L S + S + +  F      NI +      HH P   P  
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFD----PNIPNSSNFLPHHFP---PTA

Query:  ASANGGSAGLFHRHLHDLHPQGL------GFLRPIRGIPVYQNPPSS-------------------SSSSSSSYPIFGGSGGGGGGSGSQFGYNGF----
         S+N  ++  F       H QG         LRPIRGIP+Y NPP                      SSS+SS  + G +      S S   Y+      
Subjt:  ASANGGSAGLFHRHLHDLHPQGL------GFLRPIRGIPVYQNPPSS-------------------SSSSSSSYPIFGGSGGGGGGSGSQFGYNGF----

Query:  --RSRFLARFPAKRSIRAPRMR
          R+RF+ RFPAKRS+RAPRMR
Subjt:  --RSRFLARFPAKRSIRAPRMR

Arabidopsis top hits

e value

%identity

Alignment

AT1G32240.1 Homeodomain-like superfamily protein

1.9e-14

37.84

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Query:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFD----PNIPNSSNFLPHHFP---PTA
        MELFPAQPDLSLQISPP    NSKPSS T  RR+  +       LDL FW     +    L S + S + +  F      NI +      HH P   P  
Subjt:  MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFD----PNIPNSSNFLPHHFP---PTA

Query:  ASANGGSAGLFHRHLHDLHPQGL------GFLRPIRGIPVYQNPPSS-------------------SSSSSSSYPIFGGSGGGGGGSGSQFGYNGF----
         S+N  ++  F       H QG         LRPIRGIP+Y NPP                      SSS+SS  + G +      S S   Y+      
Subjt:  ASANGGSAGLFHRHLHDLHPQGL------GFLRPIRGIPVYQNPPSS-------------------SSSSSSSYPIFGGSGGGGGGSGSQFGYNGF----

Query:  --RSRFLARFPAKRSIRAPRMR
          R+RF+ RFPAKRS+RAPRMR
Subjt:  --RSRFLARFPAKRSIRAPRMR

Sequences

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CDS sequence

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ATGGAACTTTTTCCAGCTCAACCAGATTTGTCTCTTCAAATTAGCCCTCCAAATTCATCAACAAATTCAAAACCCTCTTCTAATACCAATTGGAGAAGACAACCCATTTC
TTCTATTTCCCCACAAAATCCTCTAGATTTGGTGTTTTGGAACAATAATAATGTTAATAATAATAAATTATTGCCTTCTCCTAATAATTCTTCTTCTAATTCTTCTAATT
TTGACCCTAATATTCCTAATTCCTCCAATTTCCTCCCCCACCATTTTCCTCCCACTGCCGCTAGCGCCAATGGCGGTAGCGCCGGGCTCTTCCACCGCCATCTCCACGAT
CTTCACCCTCAAGGGCTTGGATTCTTGAGACCTATTAGGGGAATTCCAGTGTATCAAAACCCTCCTTCCTCGTCTTCGTCTTCATCCTCTTCTTACCCGATATTCGGGGG
TAGCGGTGGCGGTGGCGGTGGCAGTGGTAGTCAGTTTGGTTATAATGGTTTTCGATCGAGGTTTTTGGCGAGGTTTCCGGCGAAACGGAGCATCCGAGCGCCGAGAATGC
GTGATAAGGGCTCTGCAGCAATACTTACTACTTTTTTCTTTTTTTCTTCTTTTTTT

mRNA sequence

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ATTTAATCATCATCATCATCATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAAGAAGAACAAAGAAGAAAAAAATGGAACTTTTTCCAGCTCAACCAGATTTGT
CTCTTCAAATTAGCCCTCCAAATTCATCAACAAATTCAAAACCCTCTTCTAATACCAATTGGAGAAGACAACCCATTTCTTCTATTTCCCCACAAAATCCTCTAGATTTG
GTGTTTTGGAACAATAATAATGTTAATAATAATAAATTATTGCCTTCTCCTAATAATTCTTCTTCTAATTCTTCTAATTTTGACCCTAATATTCCTAATTCCTCCAATTT
CCTCCCCCACCATTTTCCTCCCACTGCCGCTAGCGCCAATGGCGGTAGCGCCGGGCTCTTCCACCGCCATCTCCACGATCTTCACCCTCAAGGGCTTGGATTCTTGAGAC
CTATTAGGGGAATTCCAGTGTATCAAAACCCTCCTTCCTCGTCTTCGTCTTCATCCTCTTCTTACCCGATATTCGGGGGTAGCGGTGGCGGTGGCGGTGGCAGTGGTAGT
CAGTTTGGTTATAATGGTTTTCGATCGAGGTTTTTGGCGAGGTTTCCGGCGAAACGGAGCATCCGAGCGCCGAGAATGCGTGATAAGGGCTCTGCAGCAATACTTACTAC
TTTTTTCTTTTTTTCTTCTTTTTTT

Protein sequence

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MELFPAQPDLSLQISPPNSSTNSKPSSNTNWRRQPISSISPQNPLDLVFWNNNNVNNNKLLPSPNNSSSNSSNFDPNIPNSSNFLPHHFPPTAASANGGSAGLFHRHLHD
LHPQGLGFLRPIRGIPVYQNPPSSSSSSSSSYPIFGGSGGGGGGSGSQFGYNGFRSRFLARFPAKRSIRAPRMRDKGSAAILTTFFFFSSFF

Lsi07G011700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome