CuGenDBv2

Gene ID	Lsi07G012310
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Vacuolar protein sorting 55 (VPS55) family protein
Genome location	chr07:17972184..17975906
RNA-Seq Expression	Lsi07G012310
Synteny	Lsi07G012310
Gene Ontology terms	GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process) GO:0005768 - endosome (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR007262 - Vps55/LEPROT

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004150170.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]

3.6e-46

75.17

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP+SLQACL MGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IP+ILKHAGIIGWGAMAMDLSSFVVFV+AILCFMGMSEDDDY+MF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

XP_008448742.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]

6.1e-46

75.17

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACL MGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IP+ILKHAGIIGWGAMAMDLSSFVVFV+AILCFMGMSEDDDY+MF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

XP_022923424.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata]

4.7e-46

75.86

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACLSMGKVAFLAILVSGGIV+QILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS +GSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDD YTMF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

XP_022965211.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima]

4.7e-46

75.86

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACLSMGKVAFLAILVSGGIV+QILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS +GSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDD YTMF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

XP_038906097.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida]

2.5e-47

77.93

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACLSMGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5B3 Uncharacterized protein

1.7e-46

75.17

Show/hide

Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP+SLQACL MGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IP+ILKHAGIIGWGAMAMDLSSFVVFV+AILCFMGMSEDDDY+MF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

A0A1S3BJT4 vacuolar protein sorting-associated protein 55 homolog

2.9e-46

75.17

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACL MGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IP+ILKHAGIIGWGAMAMDLSSFVVFV+AILCFMGMSEDDDY+MF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

A0A5D3CIX3 Vacuolar protein sorting-associated protein 55-like protein

2.9e-46

75.17

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACL MGKVAFLAILVSGGIVMQILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS VGSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IP+ILKHAGIIGWGAMAMDLSSFVVFV+AILCFMGMSEDDDY+MF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

A0A6J1E6D1 vacuolar protein sorting-associated protein 55 homolog

2.3e-46

75.86

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACLSMGKVAFLAILVSGGIV+QILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS +GSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDD YTMF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

A0A6J1HL31 vacuolar protein sorting-associated protein 55 homolog

2.3e-46

75.86

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA
        MADLP SLQACLSMGKVAFLAILVSGGIV+QILACALY+NWWPMLSV       + Y   P+  LF A        T     WINATKFLTGAS +GSIA
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFLA---CLLNMTRIMKDWINATKFLTGASAVGSIA

Query:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF
        IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDD YTMF
Subjt:  IPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDDYTMF

SwissProt top hits

e value

%identity

Alignment

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog

1.9e-34

58.04

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein

1.4e-35

58.04

Show/hide

Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein

1.4e-35

58.04

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Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein

1.4e-35

58.04

Show/hide

Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein

1.4e-35

58.04

Show/hide

Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein

1.4e-35

58.04

Show/hide

Query:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS
        MAD+P  L+ CL MGK+AFLAILVS GIV+QILACAL++NWWPMLSV       + Y   P+  LF        L N +     WINA KFLTGASAVGS
Subjt:  MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYA--PLETLFL-----ACLLNMTRIMKDWINATKFLTGASAVGS

Query:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD
        +AIP ILKHAG+IGWGA+A+DLSS+VVF++AIL ++ + +  D
Subjt:  IAIPIILKHAGIIGWGAMAMDLSSFVVFVIAILCFMGMSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAGACTTACCAAGTTCTTTACAGGCCTGTTTGAGTATGGGTAAGGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGTGCCTT
GTACAGTAATTGGTGGCCAATGCTAAGTGTTAGAACTAGAAGTGCTTCTCATCTCCATTATGCTCCACTTGAAACTCTCTTTCTAGCATGTTTACTGAACATGACTCGCA
TAATGAAAGACTGGATCAATGCGACGAAATTCTTGACCGGAGCTTCGGCTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCA
ATGGCAATGGACCTCTCGTCGTTTGTAGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGACTACACTATGTTCTGA

mRNA sequence

Show/hide mRNA sequence

ATTGTTTCAACTCGACCCAACCCACAAACACCACACCACTCTATTTGGTGTCATCTTGATTTCATTTCTTTCTAACTACAAAGTTGTCCAAATTATCCTTATTAATAATA
ATAGTGGGCTGAGACGCCGCCGCCCGTGATCGGAATCGGACTGCGAGTCGGGGAAACGAGAAAATTTCTTCACGAATCCCCATCAAAACGTACCTGATCGTCGTAATTTC
TTTGCCTCTTAATCTCGTTTTCTGACAGAATTCGTCTTTGACCTAAATGAGGTGAGTACCAACCAATGGCAGACTTACCAAGTTCTTTACAGGCCTGTTTGAGTATGGGT
AAGGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGTGCCTTGTACAGTAATTGGTGGCCAATGCTAAGTGTTAGAACTAGAAGTGC
TTCTCATCTCCATTATGCTCCACTTGAAACTCTCTTTCTAGCATGTTTACTGAACATGACTCGCATAATGAAAGACTGGATCAATGCGACGAAATTCTTGACCGGAGCTT
CGGCTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCAATGGCAATGGACCTCTCGTCGTTTGTAGTATTCGTGATTGCCATT
TTGTGTTTCATGGGGATGAGCGAAGACGACGACTACACTATGTTCTGAGATACTGCATCTCCATGGTAATGAAGCTTTGCTATATATCTCCATCAGGTGAGGCTTCTGGC
TTTGTTCCTTCTTGTCTGAGCTTCACCTTTCACATCTGCACATGTTTAATGAAGATTATTCTTCTCTATTTATTTCTTCATTTGTTTGTTGGTTTGTTGTTGTCTTTTGA
TACTTGTTCTTACACCAATATTGAGATGTAAAAGAAAAGGGTTGATATTCTAATCCCAGATTGTTGAGTGTATTTGTATATTGGGAAAGAAATATGCGTTAAACCAGATG
TGAATTATGACTGGTTTCACTTCATGCTTGAAATGGAATTGCAGAGTGTTTATTAGTTCTTTGTTT

Protein sequence

Show/hide protein sequence

MADLPSSLQACLSMGKVAFLAILVSGGIVMQILACALYSNWWPMLSVRTRSASHLHYAPLETLFLACLLNMTRIMKDWINATKFLTGASAVGSIAIPIILKHAGIIGWGA
MAMDLSSFVVFVIAILCFMGMSEDDDYTMF

Lsi07G012310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome