; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G012510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G012510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationchr07:18242882..18245788
RNA-Seq ExpressionLsi07G012510
SyntenyLsi07G012510
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]1.6e-8492.08Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE
        LGIADLHTPEAV AAESAIIGN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSNSRKTSCRSKSKGKGK KKRPKI  
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE

Query:  LS
        LS
Subjt:  LS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]7.3e-8591.58Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE
        LGIADLHTPEAVAAAESAIIGN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK SCRSKSKGKGK KKRPKI  
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE

Query:  LS
        LS
Subjt:  LS

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]9.0e-8390.29Show/hide
Query:  MRHASKDLLYLERKDFSSSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIE
        MRH SKDLLYLERKD SSSSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+
Subjt:  MRHASKDLLYLERKDFSSSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIE

Query:  LDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP
        LDLMLGIADLHTPEAV AAESAIIGN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSNSRKTSCRSKSKGKGK KKRP
Subjt:  LDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP

Query:  KILELS
        KI  LS
Subjt:  KILELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]1.1e-7784.95Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERKD  SSSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+DAK++AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPL C    SSSESESEESSDDSITSD+N++DNEKSD QNTD  NR SVKLKRS SR+ +CRS+S+ KGK  KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]1.0e-8695.07Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSKEP RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAK+NAEKYDIEALDGNES+VIELDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC-SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKIL
        LGIADLHTPEAVAAAESAIIGNQPVIPLTC SSSESESEESSDDSITS+DNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGK K +KRPKIL
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC-SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKIL

Query:  ELS
        ELS
Subjt:  ELS

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein7.9e-8592.08Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRH SKDLLYLERKD SSSSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMD+KENAEKYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE
        LGIADLHTPEAV AAESAIIGN PVIPLTCSSSESESEESSDDSITSD +NDDNEKSDDQ TD SNR SVKLKRSNSRKTSCRSKSKGKGK KKRPKI  
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE

Query:  LS
        LS
Subjt:  LS

A0A1S3BJW4 uncharacterized protein LOC1034908383.6e-8591.58Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE
        LGIADLHTPEAVAAAESAIIGN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK SCRSKSKGKGK KKRPKI  
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE

Query:  LS
        LS
Subjt:  LS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF343.6e-8591.58Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL+LERKD S+SSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMD+KENA+KYDIEALDGNESEVI+LDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE
        LGIADLHTPEAVAAAESAIIGN PVIPLTCSSSESESEESSDDSITSD +N+DNEKSDDQNTD SNR SVKLKRSNSRK SCRSKSKGKGK KKRPKI  
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILE

Query:  LS
        LS
Subjt:  LS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X11.6e-7785.37Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERKD  SSS ESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+DAK++AEKYDIEAL+G+ESEVIELDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSS---ESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI L CSSS   ESESEESSDDSITSD+N+DDNEKSD+QNTD  NR SVKLKR  SRKT+CRS+SK KGK  KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTCSSS---ESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X15.5e-7884.95Show/hide
Query:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM
        MRHASKDLL LERKD  SSSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+DAK++AEKYDIEAL+GNESEVIELDLM
Subjt:  MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPL C    SSSESESEESSDDSITSD+N++DNEKSD QNTD  NR SVKLKRS SR+ +CRS+S+ KGK  KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLTC----SSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein1.2e-2452.48Show/hide
Query:  KDLLYLERKDFSSSS-LESSLLVC---KKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLML
        KDLL LE K+ SSSS ++S+LL+C    K     E     KP   P  KS +LG++K FLGV++EANKK    ++ N E Y+IEAL GNESE+IE+DLML
Subjt:  KDLLYLERKDFSSSS-LESSLLVC---KKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLML

Query:  GIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSD
        G+ADL+TPEAV+AAE+AI G  P      SSS+ ES+  S+
Subjt:  GIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESESEESSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTTTCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGACGTCCAAGGAGCC
CTGTCGGAATGAAAAACCCATTACCGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGG
ATGCAAAGGAAAATGCTGAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAA
GCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCAGAGTCTGAAGAAAGTAGTGATGATAGCATTACCAG
TGACGACAATAACGATGACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAGATCGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACCAGCTGTAGAA
GTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAACTTTATTTTTCCTATCCTTGGGAGCAGCATTTGTCAGACTTTTTGTTCTTAAACCCTATTTCACCTTCAGCTCCCCCTCCCTCCCCTTTCCAGCCACTGCACCTC
GCGCCACCGCACGCCGTCTCAGTGGGTGCCGCAATCTCAGCCTTCCCACGAAATCGCCGCCGCTGCCTCCCTCATTCCAAATTCAAGGGTTCCAACACAGGGGTTACAAC
GAAAAACAATTCCCATTGGAACGATCTTTCGTCCCCAAACCAATTTCTTGGCTCTACTGAAGGCGAACAGTTTCTCGGCGACTCTTCTTCAGCTCTCTTTTCCTTTCTCA
CAGTCGTGGGAAAGTGCTTCCGGCCGGCGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTGGGACAAAACGCAGCTAGAAGACGGGAAAGATGCGGCATGCTAGCAA
GGATCTTTTGTATTTGGAGCGGAAGGATTTTTCCTCTTCGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAACTCGACGTCCAAGGAGCCCTGTCGGAATGAAAAAC
CCATTACCGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCT
GAAAAATATGATATTGAAGCCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGTTGGGTATTGCCGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGA
ATCTGCAATAATTGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCAGAGTCTGAAGAAAGTAGTGATGATAGCATTACCAGTGACGACAATAACGATG
ACAATGAAAAGAGCGACGATCAGAATACTGACCACAGTAACAGATCGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAA
GGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAAGAGCCATCTTTTGATCACGCCTGTCGTCTCAATATGGATGCGCCGTTATGGTTTTAGAGTTTTATTCA
CGATCGGTGTCATTGGGGGGGAGTATATGAAGTTTCTGAAGCTTGCACTGACAAAATCTCCAAGATTGATTGCGAGCCTAATCCTTTAAGCGTGGGCGGTAGGAAGCAAT
CTTGCTCGACCTTACAATTTCAAGTTATTTCTCTATGGCTTCGACCTTATGATATCAAGTTATTTCTCTCTTCACCATTATCATGATTTCAATTGTAGGGAAGATGCTGT
CTTTATGCATTTCTATTAGGAACTCTAATATAAATTTTGTAATTAGTCTTGGTCAGTTTGCCAATTTTGGTTTGTATACTTGATGTCAGACTTCGATACTTCAAAAATGG
CCATTTTTTTTCCACTTGAGCATG
Protein sequenceShow/hide protein sequence
MRHASKDLLYLERKDFSSSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIEALDGNESEVIELDLMLGIADLHTPE
AVAAAESAIIGNQPVIPLTCSSSESESEESSDDSITSDDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRKTSCRSKSKGKGKLKKRPKILELS