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Lsi07G012610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G012610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationchr07:18437373..18437831
RNA-Seq ExpressionLsi07G012610
SyntenyLsi07G012610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596882.1 hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia]5.6e-1356.95Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSP
        MA+ARAMLVLAL   ALSSS+IAQ PS    PA+AAAP PSTPSPVA+P  + PP ASPP  IS+PP A         ASPP M  SP   PMPDSPPS 
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSP

Query:  PGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVL
        P P                   P  SAGFSIH GGYKA +AAVLGG+A VL
Subjt:  PGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVL

XP_022923372.1 classical arabinogalactan protein 9-like [Cucurbita moschata]1.7e-3374.53Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--
        MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP       ASPP S+STPP AAPPT+PP +ASPP MES P+PGP  
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--

Query:  MPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV
        MPDSPPSPPGPS  P   P PA APSPP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Subjt:  MPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV

XP_023553563.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]3.8e-3375.31Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--
        MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP       ASPP S+STPP AAPPT+ P +ASPP MES P+PGP  
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--

Query:  MPDSPPSPPGPSSSPMSPPPPAPAPS-PPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV
        MPDSPPSPPGPS  P S P PA APS PPSPPPP AGFSI  GGYKAA VAAVLGGLA+VLV
Subjt:  MPDSPPSPPGPSSSPMSPPPPAPAPS-PPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV

XP_032465476.1 basic proline-rich protein-like, partial [Phocoena sinus]2.1e-0454.46Show/hide
Query:  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPP
        SP P P P+  + PPP +PSP   PP  PPP  SPP S S PP+ +PP  P    SPPP    P+P P P SPP PP P  SP  PPPP+P P PPSPPP
Subjt:  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPP

Query:  P
        P
Subjt:  P

XP_038903480.1 classical arabinogalactan protein 9-like [Benincasa hispida]4.6e-4788.96Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSP
        MASARAMLVLALSLLAL SSSIAQSPSPAPGPASAAAPPPS+P PVAAPPTTPPP ASPP +ISTPPAAAPP IPP +ASPP MESSP PGPMPDSPPSP
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSP

Query:  PGPSSSP--MSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV
        PGPS SP  MSPP PAPAPSPPSPPPPSAGFSIHQGGYKAA AAVLGGLAV LV
Subjt:  PGPSSSP--MSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV

TrEMBL top hitse value%identityAlignment
A0A0A0L458 Uncharacterized protein2.3e-3680.25Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESS--PAPGP-MPDSP
        MASARAMLVL LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTP PVA PPTTPPP ASPP+SISTPPAAAP   PP +ASPPPME S  PAPGP MP+ P
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESS--PAPGP-MPDSP

Query:  PSPPGPSSSPMSP--PPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV
        PSP  PS SPMSP  P PAPAP+PPS  P SAGFSIHQGGY A VAAVLGGLAVVLV
Subjt:  PSPPGPSSSPMSP--PPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV

A0A419Q988 Cell surface glycoprotein 1 (Fragment)3.0e-0454.13Show/hide
Query:  SSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPA--AAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPA
        S S   SP P+P P+   +PPP +P P  +PP +PPP  SPP+  S PP+   +PP  PP   SP P  S P+P P   SPPSPP PS SP SPPPP P+
Subjt:  SSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPA--AAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPA

Query:  PSPPSPPPP
        PSPPSPPPP
Subjt:  PSPPSPPPP

A0A6J1E5X6 classical arabinogalactan protein 9-like8.2e-3474.53Show/hide
Query:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--
        MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP       ASPP S+STPP AAPPT+PP +ASPP MES P+PGP  
Subjt:  MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP------EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--

Query:  MPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV
        MPDSPPSPPGPS  P   P PA APSPP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Subjt:  MPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV

W5PQH5 NDT80 domain-containing protein1.0e-0457.69Show/hide
Query:  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM--ESSPAPGPMPDSPPS-PPGPSSSPMSPPPPAPAPSPPS
        SPSPAP P S    PPS PSP + PP++PPP   PP   S PP+   P+ PP+  SPPP    SSP+P P P SPPS PP P  SP SPPPP P  SPPS
Subjt:  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM--ESSPAPGPMPDSPPS-PPGPSSSPMSPPPPAPAPSPPS

Query:  PPPP
        PPPP
Subjt:  PPPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGC
ACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCA
TCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCG
CCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCT
GGCCGTCGTCCTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGC
ACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCA
TCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCG
CCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCT
GGCCGTCGTCCTGGTTTAA
Protein sequenceShow/hide protein sequence
MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSP
PPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV