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Lsi07G012620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G012620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich cell wall structural protein 1-like
Genome locationchr07:18437441..18448344
RNA-Seq ExpressionLsi07G012620
SyntenyLsi07G012620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577661.1 hypothetical protein SDJN03_25235, partial [Cucurbita argyrosperma subsp. sororia]6.0e-2472.93Show/hide
Query:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAGAGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS----
        A PPNTAAT AALYPP W+ENPA  GGGDGGDGA AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI GG VGGAA GGV+ML GG+A+    
Subjt:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAGAGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS----

Query:  --GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD
          GGGVVGGAATG GV+GGGAA  AGPGAGEGD
Subjt:  --GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD

XP_016900591.1 PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]1.6e-2480Show/hide
Query:  MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAA
        MENPALGGG DGGD  GAGAGGG DIG  L  GGDGGLSGIGPGAGL SIGGG+AI+ GG+ GG AAGGVEML GG+A+GGGVVGG+ATG GVDGGGAA 
Subjt:  MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAA

Query:  EAGPGAGEGD
        EAGPG GEGD
Subjt:  EAGPGAGEGD

XP_023007607.1 glycine-rich protein 5-like [Cucurbita maxima]9.6e-2268.89Show/hide
Query:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS--
        A PPNTAAT AALYPP W+ENPA GGGGDGGDG G  AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI GG VGGAA GGV+ML GG+A+  
Subjt:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS--

Query:  ----GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD
            GG VVGGAA G G++GG A   AGPGAGEGD
Subjt:  ----GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD

XP_031738671.1 glycine-rich cell wall structural protein 1-like [Cucumis sativus]6.7e-1575.25Show/hide
Query:  MENPALGGGGDGGDGAGAGG--GGDIGLELGPGGDGGLSGI-GPGAG--LDSIGGGEAIVGGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGA
        MENPAL G  DGG GAGAG   GGDIGL L  GGDGG SGI GPGAG  L SIGGG+AI+GG+  GAAAGGVEML GG+A+GGGVVGG ATG GVDGGGA
Subjt:  MENPALGGGGDGGDGAGAGG--GGDIGLELGPGGDGGLSGI-GPGAG--LDSIGGGEAIVGGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGA

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A1S4DX83 glycine-rich cell wall structural protein 1-like7.7e-2580Show/hide
Query:  MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAA
        MENPALGGG DGGD  GAGAGGG DIG  L  GGDGGLSGIGPGAGL SIGGG+AI+ GG+ GG AAGGVEML GG+A+GGGVVGG+ATG GVDGGGAA 
Subjt:  MENPALGGGGDGGD--GAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIV-GGMVGGAAAGGVEMLVGGDASGGGVVGGAATGDGVDGGGAAA

Query:  EAGPGAGEGD
        EAGPG GEGD
Subjt:  EAGPGAGEGD

A0A6J1KZ66 glycine-rich protein 5-like4.7e-2268.89Show/hide
Query:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS--
        A PPNTAAT AALYPP W+ENPA GGGGDGGDG G  AG G + G   GPGGDGGLSGI  GPG G DSI GGEAI GG VGGAA GGV+ML GG+A+  
Subjt:  ASPPNTAAT-AALYPPWWMENPALGGGGDGGDGAG--AGGGGDIGLELGPGGDGGLSGI--GPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDAS--

Query:  ----GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD
            GG VVGGAA G G++GG A   AGPGAGEGD
Subjt:  ----GGGVVGGAATGDGVDGGGAAAEAGPGAGEGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTGACGACGGCCAGCCCACCCAACACCGCCGCAACAGCCGCCTTGTACCCGCCCTGGTGGATGGAAAATCCCGCGCTCGGCGGCGGAGGCGACGGCGGCGACGG
AGCTGGCGCCGGAGGCGGCGGAGACATTGGGCTTGAACTTGGGCCTGGAGGCGATGGTGGGCTGTCGGGCATTGGGCCTGGGGCTGGGCTCGATTCCATAGGCGGTGGAG
AAGCTATCGTCGGTGGGATGGTGGGAGGAGCCGCCGCCGGTGGAGTTGAGATGCTTGTCGGCGGTGACGCTTCAGGGGGCGGTGTAGTCGGGGGAGCTGCAACCGGCGAT
GGGGTTGACGGCGGCGGTGCGGCGGCGGAGGCGGGACCTGGAGCAGGGGAGGGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTGACGACGGCCAGCCCACCCAACACCGCCGCAACAGCCGCCTTGTACCCGCCCTGGTGGATGGAAAATCCCGCGCTCGGCGGCGGAGGCGACGGCGGCGACGG
AGCTGGCGCCGGAGGCGGCGGAGACATTGGGCTTGAACTTGGGCCTGGAGGCGATGGTGGGCTGTCGGGCATTGGGCCTGGGGCTGGGCTCGATTCCATAGGCGGTGGAG
AAGCTATCGTCGGTGGGATGGTGGGAGGAGCCGCCGCCGGTGGAGTTGAGATGCTTGTCGGCGGTGACGCTTCAGGGGGCGGTGTAGTCGGGGGAGCTGCAACCGGCGAT
GGGGTTGACGGCGGCGGTGCGGCGGCGGAGGCGGGACCTGGAGCAGGGGAGGGAGATTGA
Protein sequenceShow/hide protein sequence
MSLTTASPPNTAATAALYPPWWMENPALGGGGDGGDGAGAGGGGDIGLELGPGGDGGLSGIGPGAGLDSIGGGEAIVGGMVGGAAAGGVEMLVGGDASGGGVVGGAATGD
GVDGGGAAAEAGPGAGEGD