; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G012870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G012870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2
Genome locationchr07:18825111..18827514
RNA-Seq ExpressionLsi07G012870
SyntenyLsi07G012870
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650054.1 hypothetical protein Csa_010079 [Cucumis sativus]9.0e-3796.7Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
        MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ

XP_004147213.1 uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus]9.0e-3796.7Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
        MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ

XP_004147214.1 uncharacterized protein LOC101221008 isoform X2 [Cucumis sativus]5.3e-3795.65Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

XP_008448836.1 PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis melo]4.5e-3694.57Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

XP_038903088.1 protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X3 [Benincasa hispida]2.0e-3693.48Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLP+KS APSVRRFSLARSPSELGC+QSLLPFH+AVAGARMISCLSTNSRSCRALSQD
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

TrEMBL top hitse value%identityAlignment
A0A0A0L1I6 Uncharacterized protein2.1e-3981.67Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFP------
        MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFP      
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFP------

Query:  -FYCSTIV-------CLCSC
         F C   V       CLC C
Subjt:  -FYCSTIV-------CLCSC

A0A1S3BKM3 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X13.7e-3695.6Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
        MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ

A0A1S3BL94 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X22.2e-3694.57Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

A0A6J1DJ71 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X38.5e-3388.04Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASAC RIASRISQSS R  VRT    KS SSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFH+AVAGARMISCLSTNSRSCRALSQD
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

A0A6J1DKL6 uncharacterized protein LOC111021400 isoform X22.5e-3286.96Show/hide
Query:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASAC RIASRISQSS R  VRT    KS SSPFPLPSKS APSVRRFSLARSPSELGCVQSLLPFH+AVAGARMISCLSTNSRSCRALSQ+
Subjt:  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17310.1 unknown protein1.7e-1755.91Show/hide
Query:  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ
        MASAC+++ +R S SSL++ +R  T  ++ +SS+ F LPS+      R FS +R PSELGCVQSLLP H  VA AR+ SCLST SRS RALSQ
Subjt:  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ

AT4G17310.2 unknown protein1.0e-1755.32Show/hide
Query:  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        MASAC+++ +R S SSL++ +R  T  ++ +SS+ F LPS+      R FS +R PSELGCVQSLLP H  VA AR+ SCLST SRS RALSQ+
Subjt:  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

AT5G47455.2 unknown protein1.2e-1551.04Show/hide
Query:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSELGCVQSLLP H  VA AR+ SCLST SRS RAL+QD
Subjt:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD

AT5G47455.4 unknown protein5.5e-1650.51Show/hide
Query:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPF
        R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSELGCVQSLLP H  VA AR+ SCLST SRS RAL+QD  F
Subjt:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPF

AT5G47455.5 unknown protein1.2e-1551.04Show/hide
Query:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD
        R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSELGCVQSLLP H  VA AR+ SCLST SRS RAL+QD
Subjt:  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCGTCTCTCAGAACATTCGTCCGTACGAATCCGTCGGCCAAATCTTCATCTTCTCCATTCCCTCTACC
TTCCAAATCCCCTGCACCATCTGTTCGCCGATTCTCTCTCGCCAGGTCTCCTTCGGAGCTGGGATGCGTGCAATCACTTTTGCCATTTCACGACGCGGTTGCTGGAGCGA
GAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGACTTTCCCTTTTATTGCTCTACAATTGTTTGTCTGTGTTCTTGTGTTGGTATTTGC
TGA
mRNA sequenceShow/hide mRNA sequence
CTAAAACCCTCAACCCCTTCAGTACAGTCGTTTCTTGTAGAATTCCCAGATCTCCGCTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTC
GTCTCTCAGAACATTCGTCCGTACGAATCCGTCGGCCAAATCTTCATCTTCTCCATTCCCTCTACCTTCCAAATCCCCTGCACCATCTGTTCGCCGATTCTCTCTCGCCA
GGTCTCCTTCGGAGCTGGGATGCGTGCAATCACTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCG
CTTTCTCAGGACTTTCCCTTTTATTGCTCTACAATTGTTTGTCTGTGTTCTTGTGTTGGTATTTGCTGATTCTTGTTGTCTTTATCGTTGTTGTGTTGTTCCGAAAATCT
TGCAGATTGCACATAATATCGGTTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTACGGAGCTTTCCGATTATGGTGCAGTGAATTGATTTCAAATGCAATTGATGG
TACGTGAGACATATTTGCTGTTTTTGAAGAGTTAGGTTTATCCGTTCCAAGGTGACTTCTTTGGGCAGTTTGTTGCAGTGACAAGGGGATATCGGCAATGGTTTAGAGGA
TTTCTTTTACGAACTGTGACCAGTACTGCTCAATTTGGTTAACTAATTTTGGTTCGTCTAAACGACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGC
AACTCAGGATATCATATTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCTGTGTCATACATTGGATATGTACGTTTCTTTTTTTTTTTTTTGAGATACACAT
Protein sequenceShow/hide protein sequence
MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPFYCSTIVCLCSCVGIC