; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G013060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G013060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationchr07:19095726..19096990
RNA-Seq ExpressionLsi07G013060
SyntenyLsi07G013060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2256.62Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------
        M MP    + L+FLST LH CDAR  +   S    SR+EP +IS G  T+Q E+S DES S+  S  E  VG E+LK GMKK  +RL ME P +      
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------

Query:  --EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
          +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  --EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]8.0e-3770.23Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKQGMKKHGKRLVMEFPKKEKV
        MAMPY FLILL F STLH CDA R RFF+SS+ VSRI E H +SQGIW+     E SFD++N+D   + KE I+G EMLK GMK+ G RLVMEFP KEKV
Subjt:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKQGMKKHGKRLVMEFPKKEKV

Query:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        +NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]1.5e-2258.09Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------
        M MP  F + L+FLST LH CDAR  +   S    SR+E  LIS G  T+Q ERS DES S+  S  E  VG E+LK GMKK  +RL ME P +      
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------

Query:  --EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
          +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  --EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]1.1e-5187.2Show/hide
Query:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKKEKVLNSEEN
        MPYLFLILLIF STLH C+AR  RFFESSS VSRIEPH ISQGIW DQ ERSF+ESNSDK SYKEIIVG EMLKQGMKKHG RLVMEFP KEKVLNS+EN
Subjt:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKKEKVLNSEEN

Query:  EVGEDMVVMDYAQPHRKPPIHNAKP
        EVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]8.2e-5086.4Show/hide
Query:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKKEKVLNSEEN
        MPYLFLILLIF STLH C+AR  RFFESSS VSRIEPH ISQGIW DQ ERSF+ESNSDK SYKEIIVG EMLK GMKKHG RLVMEFP KEKVLNS+EN
Subjt:  MPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKKEKVLNSEEN

Query:  EVGEDMVVMDYAQPHRKPPIHNAKP
        EVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein3.9e-3770.23Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKQGMKKHGKRLVMEFPKKEKV
        MAMPY FLILL F STLH CDA R RFF+SS+ VSRI E H +SQGIW+     E SFD++N+D   + KE I+G EMLK GMK+ G RLVMEFP KEKV
Subjt:  MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRI-EPHLISQGIWT--DQTERSFDESNSDKASY-KEIIVGNEMLKQGMKKHGKRLVMEFPKKEKV

Query:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        +NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A2G9HFQ2 Uncharacterized protein1.2e-0633.09Show/hide
Query:  LILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTER------SFDESNSDKAS-------------YKEIIVGNEMLKQGMKKHGKRLVM
        L  L+    LH C AR    ++  S+V+++E  L S+ + T   ER       F    S+K++                    +E +K   KK   RL +
Subjt:  LILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTER------SFDESNSDKAS-------------YKEIIVGNEMLKQGMKKHGKRLVM

Query:  EFPKKEKVLNSEENEVGEDMVVMDYAQPHRKPPIHN
        E P  E+ +NS++N   +D+  MDYAQPHRKPPIHN
Subjt:  EFPKKEKVLNSEENEVGEDMVVMDYAQPHRKPPIHN

A0A2J6MHI4 Uncharacterized protein2.1e-0639.55Show/hide
Query:  LHVCDARRFRFFESSSSVSRIEPHLISQ---GIWTDQTERSFDESN-SDKASYKE-------IIVGNEM-LK--------QGMKKHGKRLVMEFPK---K
        +H CD+R    F         E HLI+     I      R+ +E+N  DK S  E       +  GN++ LK        QG K H  RL ME  +   K
Subjt:  LHVCDARRFRFFESSSSVSRIEPHLISQ---GIWTDQTERSFDESN-SDKASYKE-------IIVGNEM-LK--------QGMKKHGKRLVMEFPK---K

Query:  EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        EK+ NS+++ V ED+ VMDYAQPHRKPPIHN +P
Subjt:  EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A6J1DKL1 uncharacterized protein LOC1110213961.5e-2058.02Show/hide
Query:  MAMPYLFLILLIFLSTLHVCDA-RRFRFFESSSSVSRIEPHL-ISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEF--PKKEKV
        MA P L  ILL  LSTLH CDA  R + FE S+ VSR+     I Q   TDQ ERS +++   K S   + +G  +LK GMKKH KRL MEF   +KEK+
Subjt:  MAMPYLFLILLIFLSTLHVCDA-RRFRFFESSSSVSRIEPHL-ISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEF--PKKEKV

Query:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
        ++ EENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  LNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

A0A6J1KZM9 uncharacterized protein LOC1114985218.7e-2154.35Show/hide
Query:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------
        M MP    + L+FLST LH CDAR  +   S    SR+E  +IS G   DQ +RS D+S S++ S  E  VG E+LK GMKK  +RL ME P +      
Subjt:  MAMPYLFLILLIFLST-LHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKK------

Query:  ----EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP
            +KV+NSEENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  ----EKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.9e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNAK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNAK
        E GE++VVMDY QPHRKPPIHN K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGAT
TGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAA
TGTTAAAGCAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTG
ATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA
mRNA sequenceShow/hide mRNA sequence
CCTCCTCTCTCTCACTTTCTCTCTTTTCCTTTTTCTCATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTT
TTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGATTGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGAC
AAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAATGTTAAAGCAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAA
TTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAAATTTATATATATAATATTG
TAATATTATTTCTGAAATTTCCTATGAAATATCCAAATATGTTCCAGAAATTAAAGTCCTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTACATTGGAATAAAG
Protein sequenceShow/hide protein sequence
MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKQGMKKHGKRLVMEFPKKEKVLNSEENEVGEDMVV
MDYAQPHRKPPIHNAKP