CuGenDBv2

Gene ID	Lsi07G013080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	tRNA_edit domain-containing protein
Genome location	chr07:19104174..19108288
RNA-Seq Expression	Lsi07G013080
Synteny	Lsi07G013080
Gene Ontology terms	GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process) GO:0002161 - aminoacyl-tRNA editing activity (molecular function) GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domains	IPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0041095.1 YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 [Cucumis melo var. makuwa]

6.8e-95

89.55

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIPTSNGLGM
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGM+TDIP S  +  
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIPTSNGLGM

Query:  L
        L
Subjt:  L

TYK12014.1 YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2 [Cucumis melo var. makuwa]

2.6e-94

92.23

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Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

XP_008448863.1 PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]

8.9e-95

92.75

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

XP_022951583.1 uncharacterized protein LOC111454353 [Cucurbita moschata]

6.8e-87

86.01

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MGTE+ A AE+NSMEALAKLE+RQTLI++RISKLELAYLPNLDS PS I+S+GADGDTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVL+AASV
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQA SHVVDCS+RNNSKYY+VVVQY+AKFNAETV+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY HN VTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

XP_038903466.1 uncharacterized protein LOC120090048 [Benincasa hispida]

9.5e-97

94.82

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MGTESEA AEQN MEALAKLEHRQTLILHRISKLELAYLPNLDSA SS+ SDG DGDTVARLS ILR N+VNDFSFKRVPSDYYDWPLEARRDVLDAASV
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGMRTDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLB4 uncharacterized protein LOC103490895

4.3e-95

92.75

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

A0A5A7TI57 YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2

3.3e-95

89.55

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIPTSNGLGM
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGM+TDIP S  +  
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIPTSNGLGM

Query:  L
        L
Subjt:  L

A0A5D3CLG6 YbaK/aminoacyl-tRNA synthetase-associated domain isoform 2

1.2e-94

92.23

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MG+ESEA AEQNSMEALAKLEHRQTLILHRIS LEL YLPNLDS PSS+ SDGAD DTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVLDAAS+
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAE VKSFLYSLNDGKIAKKKFNLRLAPEETS KLTGYEHNGVTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

A0A6J1GI39 uncharacterized protein LOC111454353

3.3e-87

86.01

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MGTE+ A AE+NSMEALAKLE+RQTLI++RISKLELAYLPNLDS PS I+S+GADGDTVARLS ILR NAVNDFSFKRVPSDYYDW LEARRDVL+AASV
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQA SHVVDCS+RNNSKYY+VVVQY+AKFNAETV+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY HN VTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

A0A6J1KXM4 uncharacterized protein LOC111498483

8.1e-86

84.97

Show/hide

Query:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV
        MGTE+ A AE+NSMEALAKLE+RQTLI++RISKLELAYLPNLDS PS I+SD ADGDTV+RLS ILR NAVNDFSF RVPSDYYDW LEARRDVL+AASV
Subjt:  MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASV

Query:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        DHLCKSIVLVNTQA SHVVDCS+RNNSKYY+VVVQY+AKFNAETV+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY HN VTCIGM+TDIP
Subjt:  DHLCKSIVLVNTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain

1.7e-67

70.22

Show/hide

Query:  ALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASVDHLCKSIVLVNTQAP
        A A+LE  Q  ILH+IS LE ++LP   SA  S +    + +TV RLS IL++  VNDF FKRV +DYYDWPLE+RRDVL A+SVDHLCKSIVLVNTQA 
Subjt:  ALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASVDHLCKSIVLVNTQAP

Query:  SHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP
        S+++DCSD NNSKYY+VVVQYTA+FNAE VK FLYSLN+GKI KK+FNLRLAPEETS+KLTG+EHNGVTCIGM+T+IP
Subjt:  SHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGACTGAGAGTGAAGCAACGGCAGAGCAAAACTCCATGGAAGCACTAGCGAAGCTCGAACACAGGCAGACCCTAATCCTCCATCGAATTTCAAAGCTCGAGCTCGC
ATACCTTCCAAATCTTGACTCTGCACCTTCCTCTATTACCTCTGATGGCGCAGATGGCGACACCGTTGCTCGACTCTCTGGCATTCTCAGAGCCAACGCTGTCAACGACT
TTTCCTTCAAGAGAGTGCCTTCCGATTACTACGATTGGCCTCTCGAAGCGCGACGGGACGTTCTTGATGCCGCTTCCGTCGACCATCTCTGCAAGAGCATCGTTCTGGTA
AATACTCAAGCCCCATCCCATGTTGTTGATTGCAGTGATCGCAACAATTCAAAATACTATATTGTTGTTGTTCAGTATACTGCCAAATTTAATGCTGAAACTGTTAAAAG
CTTCCTTTATTCACTCAACGATGGCAAGATAGCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGACATCTGTGAAACTAACTGGATATGAGCATAATGGAGTGA
CGTGCATTGGCATGAGAACAGATATTCCAACTAGTAATGGACTTGGCATGCTTTGTGTGACTGTAGTGGGTGTTGCTTTAAATGGGATAAAAGTTGGTTCCATTCATTTT
ACCCACATCTCGAGGCTAATTCTTAGATGA

mRNA sequence

Show/hide mRNA sequence

TTGCAATTAAAAAAACAATAAATTAAAAAAAAAAAAAAGAAAGAAGAAAGCACATTCAGCTGAATTAGCGAATGGGGACTGAGAGTGAAGCAACGGCAGAGCAAAACTCC
ATGGAAGCACTAGCGAAGCTCGAACACAGGCAGACCCTAATCCTCCATCGAATTTCAAAGCTCGAGCTCGCATACCTTCCAAATCTTGACTCTGCACCTTCCTCTATTAC
CTCTGATGGCGCAGATGGCGACACCGTTGCTCGACTCTCTGGCATTCTCAGAGCCAACGCTGTCAACGACTTTTCCTTCAAGAGAGTGCCTTCCGATTACTACGATTGGC
CTCTCGAAGCGCGACGGGACGTTCTTGATGCCGCTTCCGTCGACCATCTCTGCAAGAGCATCGTTCTGGTAAATACTCAAGCCCCATCCCATGTTGTTGATTGCAGTGAT
CGCAACAATTCAAAATACTATATTGTTGTTGTTCAGTATACTGCCAAATTTAATGCTGAAACTGTTAAAAGCTTCCTTTATTCACTCAACGATGGCAAGATAGCAAAAAA
GAAATTCAACTTGAGACTTGCTCCAGAGGAGACATCTGTGAAACTAACTGGATATGAGCATAATGGAGTGACGTGCATTGGCATGAGAACAGATATTCCAACTAGTAATG
GACTTGGCATGCTTTGTGTGACTGTAGTGGGTGTTGCTTTAAATGGGATAAAAGTTGGTTCCATTCATTTTACCCACATCTCGAGGCTAATTCTTAGATGA

Protein sequence

Show/hide protein sequence

MGTESEATAEQNSMEALAKLEHRQTLILHRISKLELAYLPNLDSAPSSITSDGADGDTVARLSGILRANAVNDFSFKRVPSDYYDWPLEARRDVLDAASVDHLCKSIVLV
NTQAPSHVVDCSDRNNSKYYIVVVQYTAKFNAETVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEHNGVTCIGMRTDIPTSNGLGMLCVTVVGVALNGIKVGSIHF
THISRLILR

Lsi07G013080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome