; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G013310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G013310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein YABBY 4-like
Genome locationchr07:19473302..19480706
RNA-Seq ExpressionLsi07G013310
SyntenyLsi07G013310
Gene Ontology termsGO:0009944 - polarity specification of adaxial/abaxial axis (biological process)
GO:0010154 - fruit development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:1902183 - regulation of shoot apical meristem development (biological process)
GO:2000024 - regulation of leaf development (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006780 - YABBY protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19491.1 protein YABBY 4-like [Cucumis melo var. makuwa]3.3e-3870.37Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSSLPTTFSQLPPP   SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPV+MC   +L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRK
        N N +MNQTEGIDLTMATRV ND+PR PPTINRR+
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRK

XP_004150647.1 protein YABBY 4 isoform X2 [Cucumis sativus]3.3e-3869.06Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL-----------KFWFCC-----FQEEISNNP
        MSSSS PTTFSQLPPPP  SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPVNMC   +L              F       F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL-----------KFWFCC-----FQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRV ND+PR PPTINR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

XP_008448889.1 PREDICTED: protein YABBY 4-like [Cucumis melo]1.7e-3768.35Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSSLPTTFSQLPPP   SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPV+MC   +L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRV ND+PR PPTINR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

XP_038876835.1 protein YABBY 4-like isoform X1 [Benincasa hispida]7.4e-3868.35Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSS PTTFSQLPPP P SD++CYVHCNICDTILAVSVPSTSLFK VTVRCGYCANLLPVNMC    L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRVAND+PR PP+INR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

XP_038876836.1 protein YABBY 4-like isoform X2 [Benincasa hispida]7.4e-3868.35Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSS PTTFSQLPPP P SD++CYVHCNICDTILAVSVPSTSLFK VTVRCGYCANLLPVNMC    L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRVAND+PR PP+INR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

TrEMBL top hitse value%identityAlignment
A0A0A0L1N8 Uncharacterized protein1.6e-3869.06Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL-----------KFWFCC-----FQEEISNNP
        MSSSS PTTFSQLPPPP  SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPVNMC   +L              F       F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL-----------KFWFCC-----FQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRV ND+PR PPTINR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

A0A1S4DXY3 protein YABBY 4-like8.0e-3868.35Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSSLPTTFSQLPPP   SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPV+MC   +L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        N N +MNQTEGIDLTMATRV ND+PR PPTINR   K +
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

A0A5D3D7E7 Protein YABBY 4-like1.6e-3870.37Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP
        MSSSSLPTTFSQLPPP   SDQLCYVHCNICDT+LAVSVPSTSLFK VTVRCGYCANLLPV+MC   +L              +F      F EEIS NP
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL------------KFWFC----CFQEEISNNP

Query:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRK
        N N +MNQTEGIDLTMATRV ND+PR PPTINRR+
Subjt:  NQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRK

A0A6J1DKR6 axial regulator YABBY 5-like8.3e-3565Show/hide
Query:  MSSSSLPTTFSQLPP--PPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQ--------------EEISN-N
        MSSSSLPTTFSQL P  P P  DQLCYVHCNICDT+L VSVP  SLFK VTVRCG+C NLLPVNM  L      F  F               EEISN N
Subjt:  MSSSSLPTTFSQLPP--PPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQ--------------EEISN-N

Query:  PNQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR
        PN NLVMNQT+G DLTMATRVAND+PR PPTINR   K +
Subjt:  PNQNLVMNQTEGIDLTMATRVANDLPRHPPTINRRKRKHR

A0A6J1G5H6 protein YABBY 4-like3.7e-3566.41Show/hide
Query:  SSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL----KFWFCC--------FQEEISNNPNQNLVM
        S SLPTTFSQ PPPPPSSD LCYVHCN+CDT+LAVSVP  SLFK VTVRCG+CANLLPVNM    +L     F            F EEIS NPN N VM
Subjt:  SSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKIL----KFWFCC--------FQEEISNNPNQNLVM

Query:  NQTEGIDLTMATRVANDLPRHPPTINRRKRK
        NQT+GIDL MATRV ND+PR PP+INR   K
Subjt:  NQTEGIDLTMATRVANDLPRHPPTINRRKRK

SwissProt top hitse value%identityAlignment
A2X7Q3 Protein YABBY 42.7e-1466.13Show/hide
Query:  SSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        SSSS       L  P P ++QLCYVHCN CDTILAV VP +SLFK VTVRCG+CANLL VN+
Subjt:  SSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

Q01JG2 Protein YABBY 53.7e-1663.77Show/hide
Query:  SSLPTTFS---------QLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        SS P TFS         Q PPP    +QLCYVHCN CDTILAV VP +SLFK VTVRCG+CANLL VN+
Subjt:  SSLPTTFS---------QLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

Q0JBF0 Protein YABBY 53.7e-1663.77Show/hide
Query:  SSLPTTFS---------QLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        SS P TFS         Q PPP    +QLCYVHCN CDTILAV VP +SLFK VTVRCG+CANLL VN+
Subjt:  SSLPTTFS---------QLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

Q6H668 Protein YABBY 42.7e-1466.13Show/hide
Query:  SSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        SSSS       L  P P ++QLCYVHCN CDTILAV VP +SLFK VTVRCG+CANLL VN+
Subjt:  SSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

Q9XFB1 Axial regulator YABBY 36.6e-1335.08Show/hide
Query:  MSSSSLPTTFSQLPPPP--PSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDL
        MSS S+ ++ +   PP    S+DQLCYVHC+ CDT+LAVSVP +SLFK VTVRCG+C+NLL V +    +L          +SN  +  L          
Subjt:  MSSSSLPTTFSQLPPPP--PSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDL

Query:  TMATRVANDLPRHPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGI-----DLTMATRVA------NDLPRHPPTINRQKKKRKPLDKA
                  P  PP       + RSG       N N N++M+           L MATR         ++PR PP  NR  +KR+ +  A
Subjt:  TMATRVANDLPRHPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGI-----DLTMATRVA------NDLPRHPPTINRQKKKRKPLDKA

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein2.0e-1266.67Show/hide
Query:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        SS+++CYVHC+ C TILAVSVP  SLF +VTVRCG+C NLL +N+
Subjt:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

AT2G26580.1 plant-specific transcription factor YABBY family protein2.8e-1162.22Show/hide
Query:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        +++QLCY+ CN C+ ILAV+VP +SLF +VTVRCG+C NL  VNM
Subjt:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

AT2G26580.2 plant-specific transcription factor YABBY family protein2.8e-1162.22Show/hide
Query:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        +++QLCY+ CN C+ ILAV+VP +SLF +VTVRCG+C NL  VNM
Subjt:  SSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

AT2G45190.1 Plant-specific transcription factor YABBY family protein6.1e-1463.49Show/hide
Query:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM
        MSS S P++    P     SD LCYV CN C TILAV+VP TSLFK VTVRCG C NLL VNM
Subjt:  MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNM

AT4G00180.1 Plant-specific transcription factor YABBY family protein4.7e-1435.08Show/hide
Query:  MSSSSLPTTFSQLPPPP--PSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDL
        MSS S+ ++ +   PP    S+DQLCYVHC+ CDT+LAVSVP +SLFK VTVRCG+C+NLL V +    +L          +SN  +  L          
Subjt:  MSSSSLPTTFSQLPPPP--PSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDL

Query:  TMATRVANDLPRHPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGI-----DLTMATRVA------NDLPRHPPTINRQKKKRKPLDKA
                  P  PP       + RSG       N N N++M+           L MATR         ++PR PP  NR  +KR+ +  A
Subjt:  TMATRVANDLPRHPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGI-----DLTMATRVA------NDLPRHPPTINRQKKKRKPLDKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCTTCTTCCCTTCCTACAACTTTCTCTCAACTTCCTCCTCCTCCTCCTTCTTCCGACCAACTTTGCTATGTCCATTGTAACATTTGCGACACCATTTTGGCGGT
GAGTGTTCCTTCTACTAGTTTGTTCAAAATGGTGACTGTTCGTTGTGGGTATTGTGCTAATCTTTTGCCGGTGAATATGTGTGAACTCAAAATTTTAAAGTTTTGGTTTT
GTTGTTTTCAGGAAGAGATCTCAAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGATTTAACCATGGCCACTCGTGTTGCTAATGATCTTCCAAGG
CACCCTCCAACCATAAATAGACGAAAAAGGAAGCATAGATCTGGAATGAGGGAAGAGATCTCAAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGA
TTTAACCATGGCCACTCGTGTTGCTAATGATCTTCCAAGGCACCCTCCAACCATAAATAGACAAAAGAAAAAAAGAAAGCCCTTGGATAAAGCTACTTTGGCTCAGGGGT
ATTCTCATTGGATAATAAGATGTATTGTAAACAAAATTGTAACTGTCAGTGTATATGATAGTAATTTTCTGCTAGCCTTGGCCTTGAGATATGATGAGGGTGCTAAAGAT
GTGTCAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATTGAAACAACCCACAATACAACACCCCCTCTTAACTTTTGAAAACTACAACTGAGTTTGTCACCTCCATGCATATGTCCTTTTCTCTCTCCTCTATGCATCGGAAAGCC
AAAATTATACATACATACATACATACGTGTTTTTGTTTTCTTACATGGTACCAGAGTAAGTGATATTGTAAAACGAGCGAGAAAAAAAAAAAAAGAAAGGTCTTTTCTCT
TTCGATTTTTTTTTGTTTATCGATCTTTTGACGGTAGGAAAAAGGAAGCATAGATCTGGAATGAGGGTTATTTAGTTAAGTTGTCAATCCAATCAAATCAGTCAATCAAA
AACTCGACCAATTAGAATCACAAAAACAAAAGAGAGGGAATTGTAAAAAAAGAAAAGAAAAGAAAAAAAAAGGCACAAATTGTTAAATATGTCATCTTCTTCCCTTCCTA
CAACTTTCTCTCAACTTCCTCCTCCTCCTCCTTCTTCCGACCAACTTTGCTATGTCCATTGTAACATTTGCGACACCATTTTGGCGGTGAGTGTTCCTTCTACTAGTTTG
TTCAAAATGGTGACTGTTCGTTGTGGGTATTGTGCTAATCTTTTGCCGGTGAATATGTGTGAACTCAAAATTTTAAAGTTTTGGTTTTGTTGTTTTCAGGAAGAGATCTC
AAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGATTTAACCATGGCCACTCGTGTTGCTAATGATCTTCCAAGGCACCCTCCAACCATAAATAGAC
GAAAAAGGAAGCATAGATCTGGAATGAGGGAAGAGATCTCAAATAATCCAAATCAAAATCTTGTGATGAACCAAACCGAAGGAATTGATTTAACCATGGCCACTCGTGTT
GCTAATGATCTTCCAAGGCACCCTCCAACCATAAATAGACAAAAGAAAAAAAGAAAGCCCTTGGATAAAGCTACTTTGGCTCAGGGGTATTCTCATTGGATAATAAGATG
TATTGTAAACAAAATTGTAACTGTCAGTGTATATGATAGTAATTTTCTGCTAGCCTTGGCCTTGAGATATGATGAGGGTGCTAAAGATGTGTCAACCTAGTCGAGATATT
CGGGTGCACCTTTTGATCCCTCCCGACCTTTAGTTTCTGAGATAGAAAATAAATCACATTGCACCTTCCTTCTCAAAAGTACTCGGACTCCAGAAAAGAGACAAAGGGTA
CCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGCATTAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATGTAAGAAT
ATATATAATTTAATTTCTATATTTTAAAAGATTAGACTATAATAGTTTCGTTTGTAACGCTTTCGTTTGATAACCAATTCGGTTCTATTTTATTATTATTAAGAGAAAAA
ATCAAACTTCTTGTAAAAACTAATTTAATGTCTTGCCTCTTAATTTATTTGTTTTGTTGCTCTACTTTTCTAAAAATGTTTTAAAAAATTCAAGCCAAATTTTTAAAAAC
TATGAAAAATAGTTTTAAAAGTTTTTTTAAATGCGGTGAACGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACTGAGCTATCCCCGCAAGTTG
ATGTTTTTAAGGCTCTATTTGATTACTATTTAGTTCTTGGTGTTTTATTTTTTGGTTTTTGAAAATTGTATTTGTTTTGTCACAATTTCAT
Protein sequenceShow/hide protein sequence
MSSSSLPTTFSQLPPPPPSSDQLCYVHCNICDTILAVSVPSTSLFKMVTVRCGYCANLLPVNMCELKILKFWFCCFQEEISNNPNQNLVMNQTEGIDLTMATRVANDLPR
HPPTINRRKRKHRSGMREEISNNPNQNLVMNQTEGIDLTMATRVANDLPRHPPTINRQKKKRKPLDKATLAQGYSHWIIRCIVNKIVTVSVYDSNFLLALALRYDEGAKD
VST