CuGenDBv2

Gene ID	Lsi07G013450
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	peptidyl-tRNA hydrolase ICT1, mitochondrial
Genome location	chr07:19619376..19619681
RNA-Seq Expression	Lsi07G013450
Synteny	Lsi07G013450
Gene Ontology terms	GO:0006415 - translational termination (biological process) GO:0003747 - translation release factor activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147947.2 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucumis sativus]

2.3e-34

82.65

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTN+ILREILHSQPYF+LS P+IFP   H+ NA LRFRLR+ISFGRVLCAASDS G+GGKVSSRMSQ+QQLL EAEERAL AD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

XP_022923175.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita moschata]

2.2e-37

87.76

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTNMILREILHSQPYFTLS P +FP T +N NAALRFRLREISFGRV+CAAS+S+GAGGKVSSR+SQVQQLLQEAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

XP_022965162.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita maxima]

1.3e-37

87.76

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTNMILREILHSQPYFTLS P +FP T +N NAALRFRLREISFGRV+CAAS+S+GAGGKVSSR+SQVQQLLQEAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

XP_023551980.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Cucurbita pepo subsp. pepo]

6.3e-37

86.73

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTNMILREILHSQPYF LS P +FP T +N NAALRFRLREISFGRV+CAAS+S+GAGGKVSSR+SQVQQLLQEAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

XP_038876872.1 peptidyl-tRNA hydrolase ICT1, mitochondrial [Benincasa hispida]

1.5e-38

90.82

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        M VIRT TNMILREILHSQPYFTLSSP IFP T HN NAALRFRLREISFGRVLCAASDSAGAGGKVSSR+SQVQQLLQEAEERAL AD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L715 RF_PROK_I domain-containing protein

1.1e-34

82.65

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTN+ILREILHSQPYF+LS P+IFP   H+ NA LRFRLR+ISFGRVLCAASDS G+GGKVSSRMSQ+QQLL EAEERAL AD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

A0A1S4DXZ3 peptidyl-tRNA hydrolase ICT1, mitochondrial

1.9e-34

81.63

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTT+N+ILREILHSQPYF+LS P+IFP   HN NA L FRLR+ISFGRVLCAASDS G GGKVSSR+SQ+QQLL EAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

A0A5D3D7B4 Peptidyl-tRNA hydrolase ICT1

1.9e-34

81.63

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTT+N+ILREILHSQPYF+LS P+IFP   HN NA L FRLR+ISFGRVLCAASDS G GGKVSSR+SQ+QQLL EAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

A0A6J1E5G6 peptidyl-tRNA hydrolase ICT1, mitochondrial

1.1e-37

87.76

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTNMILREILHSQPYFTLS P +FP T +N NAALRFRLREISFGRV+CAAS+S+GAGGKVSSR+SQVQQLLQEAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

A0A6J1HN26 peptidyl-tRNA hydrolase ICT1, mitochondrial

6.2e-38

87.76

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Query:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL
        MAVIRTTTNMILREILHSQPYFTLS P +FP T +N NAALRFRLREISFGRV+CAAS+S+GAGGKVSSR+SQVQQLLQEAEERALSAD EPAPKITL
Subjt:  MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G62850.2 Class I peptide chain release factor

5.2e-13

46.02

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Query:  MAVIRTTTNMILREILHSQPYFTLSS-------------PTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGG--KVSSRMSQVQQLLQEAEERA
        MA IRT TNMILRE +H       SS             P I P   +++  ++R            CAAS S G+GG  KVSSR+SQVQQ+L EAEERA
Subjt:  MAVIRTTTNMILREILHSQPYFTLSS-------------PTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGG--KVSSRMSQVQQLLQEAEERA

Query:  LSADGEPAPKITL
         SA  EP P+ITL
Subjt:  LSADGEPAPKITL

AT1G62850.3 Class I peptide chain release factor

5.2e-13

46.02

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Query:  MAVIRTTTNMILREILHSQPYFTLSS-------------PTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGG--KVSSRMSQVQQLLQEAEERA
        MA IRT TNMILRE +H       SS             P I P   +++  ++R            CAAS S G+GG  KVSSR+SQVQQ+L EAEERA
Subjt:  MAVIRTTTNMILREILHSQPYFTLSS-------------PTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGG--KVSSRMSQVQQLLQEAEERA

Query:  LSADGEPAPKITL
         SA  EP P+ITL
Subjt:  LSADGEPAPKITL

Sequences

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CDS sequence

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ATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCCCAACCCTATTTTACTCTATCATCACCCACAATCTTCCCTACAACTTTTCACAATCA
AAATGCCGCTTTGCGATTCCGGCTGCGTGAGATCAGTTTCGGTCGTGTCCTATGCGCCGCTTCGGACTCGGCCGGTGCCGGAGGCAAGGTGTCTTCCCGGATGTCGCAGG
TTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTGTCGGCTGACGGCGAACCCGCCCCTAAAATCACTCTCGGTATGTCTTAA

mRNA sequence

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Protein sequence

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MAVIRTTTNMILREILHSQPYFTLSSPTIFPTTFHNQNAALRFRLREISFGRVLCAASDSAGAGGKVSSRMSQVQQLLQEAEERALSADGEPAPKITLGMS

Lsi07G013450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome