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Lsi07G013580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G013580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionycf49-like protein
Genome locationchr07:19778193..19778525
RNA-Seq ExpressionLsi07G013580
SyntenyLsi07G013580
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019634 - Uncharacterised protein family Ycf49


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19464.1 ycf49-like protein [Cucumis melo var. makuwa]1.9e-3175.45Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T+QL T + FRR    LGF SK MVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

XP_004147956.1 uncharacterized protein LOC101205605 [Cucumis sativus]1.5e-3176.36Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T QL T + FRR    LGF SKTMVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

XP_008448929.1 PREDICTED: ycf49-like protein [Cucumis melo]1.9e-3175.45Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T+QL T + FRR    LGF SK MVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

XP_023551730.1 uncharacterized protein LOC111809617 [Cucurbita pepo subsp. pepo]2.3e-3274.55Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MS +STFL+SFS PK PISSS SSSLPTSRD AATSQL T I  RR   G   DSK+++VL+GTGFT +LLGPESASAATE  SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        A+HVS VVEW
Subjt:  AIHVSSVVEW

XP_038876845.1 ycf49-like protein [Benincasa hispida]1.9e-3177.27Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSL+STFLYSFS PKSP SS  SSSLPTSR FA        IPFRR A  L F SKTM++ LGTGFTLALLGPESASAAT+L SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

TrEMBL top hitse value%identityAlignment
A0A0A0L4G0 Uncharacterized protein7.2e-3276.36Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T QL T + FRR    LGF SKTMVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

A0A1S3BLS2 ycf49-like protein9.4e-3275.45Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T+QL T + FRR    LGF SK MVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

A0A5D3D7E0 Ycf49-like protein9.4e-3275.45Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MSLTS  LYSFS PKSP        LP S DFA T+QL T + FRR    LGF SK MVVLLGTGFTLALLGPESASAATEL SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        AIHVSSVVEW
Subjt:  AIHVSSVVEW

A0A6J1DH09 uncharacterized protein LOC1110204158.0e-3174.78Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRR-CAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELH----SSLLFSEPQNAL
        M LTST L+SFSNPK PISSS SSS P SRDFAA S+    I FRR    GL  DSK+MVVLLGTGFTLALLGPESASAA EL     SSL F+EPQNAL
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRR-CAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELH----SSLLFSEPQNAL

Query:  SLPTWAIHVSSVVEW
        SLPTWAIHVSSVVEW
Subjt:  SLPTWAIHVSSVVEW

A0A6J1E5R7 uncharacterized protein LOC1114310331.5e-2972.73Show/hide
Query:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW
        MS +STFL+SFS PK PISSS SSSLPTSR  AATSQL T I  RR   G   DSK+++VLLGTGFTL+ LGP S SAATE  SSLLF+EPQNALSLPTW
Subjt:  MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTW

Query:  AIHVSSVVEW
        A+HVS VVEW
Subjt:  AIHVSSVVEW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G22830.1 unknown protein3.6e-0740.71Show/hide
Query:  TSTFLYSFSNP---KSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALL---GPESASAATELHSSLLFSEPQNALSL
        T+T L+  + P   +    S P+SSL TS      ++   RI  R     L  D   +  L+GT    A     GP+ A+A   +  SL  SEP NALSL
Subjt:  TSTFLYSFSNP---KSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALL---GPESASAATELHSSLLFSEPQNALSL

Query:  PTWAIHVSSVVEW
        PTWA+HVSSVVEW
Subjt:  PTWAIHVSSVVEW

AT4G22830.2 unknown protein1.6e-0756.6Show/hide
Query:  LLGTGFTLALL---GPESASAATELHSSLLFSEPQNALSLPTWAIHVSSVVEW
        L+GT    A     GP+ A+A   +  SL  SEP NALSLPTWA+HVSSVVEW
Subjt:  LLGTGFTLALL---GPESASAATELHSSLLFSEPQNALSLPTWAIHVSSVVEW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCACTTCCACCTTCTTATATTCCTTCTCAAATCCCAAATCCCCCATTTCTTCTTCTCCTTCTTCCTCACTCCCCACCTCCAGAGATTTTGCCGCTACTTCTCA
ACTCACTACTAGAATTCCATTCCGGAGATGCGCCCCCGGTCTGGGTTTTGACTCCAAAACCATGGTGGTTTTGCTCGGCACGGGCTTCACTCTTGCCCTTCTGGGACCTG
AATCCGCTTCTGCTGCCACCGAATTGCATTCTTCCCTGCTATTTAGCGAGCCCCAAAATGCTCTCTCCTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAATGG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTCACTTCCACCTTCTTATATTCCTTCTCAAATCCCAAATCCCCCATTTCTTCTTCTCCTTCTTCCTCACTCCCCACCTCCAGAGATTTTGCCGCTACTTCTCA
ACTCACTACTAGAATTCCATTCCGGAGATGCGCCCCCGGTCTGGGTTTTGACTCCAAAACCATGGTGGTTTTGCTCGGCACGGGCTTCACTCTTGCCCTTCTGGGACCTG
AATCCGCTTCTGCTGCCACCGAATTGCATTCTTCCCTGCTATTTAGCGAGCCCCAAAATGCTCTCTCCTTGCCCACCTGGGCCATTCATGTTTCCAGCGTTGTTGAATGG
TGA
Protein sequenceShow/hide protein sequence
MSLTSTFLYSFSNPKSPISSSPSSSLPTSRDFAATSQLTTRIPFRRCAPGLGFDSKTMVVLLGTGFTLALLGPESASAATELHSSLLFSEPQNALSLPTWAIHVSSVVEW