; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G013700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G013700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationchr07:19883251..19884624
RNA-Seq ExpressionLsi07G013700
SyntenyLsi07G013700
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028342.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-7594.84Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN
        MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDREKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRN

Query:  AKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        AKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Subjt:  AKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_004147963.1 histone deacetylase complex subunit SAP18 [Cucumis sativus]2.0e-7490.36Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE           KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_008448944.1 PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]5.8e-7490.36Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE           KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_022152730.1 histone deacetylase complex subunit SAP18-like [Momordica charantia]2.4e-7590.96Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDRE           KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_038905116.1 histone deacetylase complex subunit SAP18-like [Benincasa hispida]1.1e-7289.76Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAP QGRPSGRPLPPP   KAPPPPPRPRFEPVDRE           KVGGHHTD+DFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

TrEMBL top hitse value%identityAlignment
A0A0A0L751 Uncharacterized protein9.7e-7590.36Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE           KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A1S3BLT9 histone deacetylase complex subunit SAP18-like2.8e-7490.36Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE           KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A5D3D7E1 Histone deacetylase complex subunit SAP18-like2.8e-7490.36Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE           KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A6J1DES5 histone deacetylase complex subunit SAP18-like1.1e-7590.96Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDRE           KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A6J1KTJ0 histone deacetylase complex subunit SAP18-like9.1e-7388.55Show/hide
Query:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
        MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDRE           KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV
Subjt:  MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE-----------KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLV

Query:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        KEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Subjt:  KEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP181.0e-2047.97Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

O55128 Histone deacetylase complex subunit SAP181.3e-2047.97Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

O64644 Histone deacetylase complex subunit SAP183.0e-4162.09Show/hide
Query:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI
        +LSFAFVYP+ +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI

Q3T022 Histone deacetylase complex subunit SAP181.0e-2047.97Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

Q5RDT5 Histone deacetylase complex subunit SAP181.0e-2047.97Show/hide
Query:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR
        +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P182.2e-4262.09Show/hide
Query:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI
        +LSFAFVYP+ +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI

AT2G45640.2 SIN3 associated polypeptide P182.0e-4062.09Show/hide
Query:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA
        A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA
Subjt:  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA

Query:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI
        +LSFAFVYP+ +G +    VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  KLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAGACCAAAGCTCCGCC
GCCTCCTCCTCGCCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTGGAGGTCATCACACTGATGAGGATTTTGCAATTAGAGGTAAGGAGCCCAAAGATGAGGTTCAGA
TTTATACGTGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCC
GATAAGCGCGGTCGATTTGTTTTGAAACAGGTGGGGGTGACACATTCTTATGGAAATGGGAGGAGGTTAGATGACAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGG
AGACTATTTGGACGTGGCAATCCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAGACCAAAGCTCCGCC
GCCTCCTCCTCGCCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTGGAGGTCATCACACTGATGAGGATTTTGCAATTAGAGGTAAGGAGCCCAAAGATGAGGTTCAGA
TTTATACGTGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCC
GATAAGCGCGGTCGATTTGTTTTGAAACAGGTGGGGGTGACACATTCTTATGGAAATGGGAGGAGGTTAGATGACAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGG
AGACTATTTGGACGTGGCAATCCTGTAG
Protein sequenceShow/hide protein sequence
MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYP
DKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL