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Lsi07G013990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G013990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description(-)-germacrene D synthase-like
Genome locationchr07:20355004..20356893
RNA-Seq ExpressionLsi07G013990
SyntenyLsi07G013990
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596799.1 hypothetical protein SDJN03_09979, partial [Cucurbita argyrosperma subsp. sororia]6.7e-3268.75Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+++DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF DG TK FI S +++P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

TYK19427.1 (-)-germacrene D synthase-like [Cucumis melo var. makuwa]5.5e-3479.35Show/hide
Query:  RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        RGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD  TKHFI S+I+EPLP
Subjt:  RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

XP_008449179.2 PREDICTED: LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Cucumis melo]2.0e-3680.21Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD  TKHFI S+I+EPLP
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

XP_022945798.1 vetispiradiene synthase 2-like isoform X1 [Cucurbita moschata]5.1e-3269.79Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF DG TK FI S +++P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

XP_022945806.1 (-)-germacrene D synthase-like isoform X2 [Cucurbita moschata]5.1e-3269.79Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF DG TK FI S +++P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

TrEMBL top hitse value%identityAlignment
A0A1S3BMD3 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like9.7e-3780.21Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD  TKHFI S+I+EPLP
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

A0A5D3D784 (-)-germacrene D synthase-like2.7e-3479.35Show/hide
Query:  RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        RGDVGSAVEC+MK++G+SEEETLVEL+ +VIKAW+DI +DYIK+TNISN+ILL VLNLARLSDLFYK+EDGYTFVD  TKHFI S+I+EPLP
Subjt:  RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

A0A6J1CQI9 (-)-germacrene D synthase-like isoform X11.8e-3066.67Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDV SAVECYMK+YG+SEEE +VEL+K+VIKAWKD+ +DY+KS    N IL CV+N+ RLSD FYK+EDGYTF +G  K FITS++ +P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

A0A6J1G1W9 (-)-germacrene D synthase-like isoform X22.5e-3269.79Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF DG TK FI S +++P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

A0A6J1G202 vetispiradiene synthase 2-like isoform X12.5e-3269.79Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQERGDVGSAVECYMK++G+SEEETLV L+ +V++AWKD+I+DY+KS+NIS +I + VLNLARLSD FYK+EDGYTF DG TK FI S +++P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

SwissProt top hitse value%identityAlignment
B5A435 Sesquiterpene synthase6.5e-2249.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L+ +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

B6SCF6 Germacrene-A synthase2.7e-2351.04Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQE+ +  SAVECYMK+YG+SEEE   EL K+V+ AWK+I ++ +K T +++ IL+  LN ++  DLFYK  DGYT V   TKH + +L+I P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

F6M8H5 Probable sesquiterpene synthase3.8e-2249.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L+ +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

F6M8H7 Probable sesquiterpene synthase1.5e-2149.47Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL
        FEQERG V S +ECYMK+YG++EEE   E +K+++KAWKDI ++ ++   +   +L  +LNL R+ D+ YK EDGYT V  A K  I SL+I+P+
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPL

Q6Q3H3 (-)-germacrene D synthase1.9e-2152.08Show/hide
Query:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        FEQ+RG V SAVECYMK++G SE+ET  E  + V +AWKDI ++ +  T +   IL+ VLNLAR+ D+ YK EDGYT      K F+TS++I+P+P
Subjt:  FEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.9e-1638.54Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K  +   K ++++++ S  ++  ++LL  LN+AR+ D+FY + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G14490.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.5e-1340.4Show/hide
Query:  FEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF-VDGATKHFITSLIIEPLP
        FEQE  RG+V   + CYMK++G+S+EE + E+ K     +K I+++Y+ +T +   IL+  LN++R    FYK+ D +T    G  K  ITSL I P+P
Subjt:  FEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTF-VDGATKHFITSLIIEPLP

AT3G14520.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein4.6e-1538.54Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K      K ++++++ S  ++  ++LL  LN ARL D+ Y + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G14540.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein9.4e-1639.58Show/hide
Query:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP
        E  RG+V + + CYMK+YG+++EE   EL+K  I   K ++++++ S   +  ++LL  LN ARL D+ Y + DGY+   G  +HF+TSL + P+P
Subjt:  EQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKS-TNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLP

AT3G29410.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.2e-1535.14Show/hide
Query:  MNKEIKMSGLYIIFEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKH
        +N   ++    + FEQE  RG+V + V CYMK++G+++E  + EL+K   +++K +I++++ S  +  +IL+  +N+AR+ DLFYK+ DG+   D     
Subjt:  MNKEIKMSGLYIIFEQE--RGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKH

Query:  FITSLIIEPLP
         I SL + P+P
Subjt:  FITSLIIEPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGAAATTAAAATGTCAGGCTTATATATAATCTTTGAACAAGAGAGAGGTGATGTTGGCTCAGCGGTTGAATGTTACATGAAAGAATATGGAATATCAGAAGA
AGAAACTTTGGTTGAATTGAAAAAGAAAGTGATTAAAGCATGGAAAGACATAATAAAAGACTATATTAAATCTACCAACATTTCAAATAAAATTCTTTTATGTGTGCTGA
ATCTTGCACGACTCTCCGACCTCTTCTATAAAAAAGAAGATGGTTACACATTTGTTGATGGAGCAACCAAACATTTCATTACCTCTCTCATTATAGAACCTTTACCAAAT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAGAAATTAAAATGTCAGGCTTATATATAATCTTTGAACAAGAGAGAGGTGATGTTGGCTCAGCGGTTGAATGTTACATGAAAGAATATGGAATATCAGAAGA
AGAAACTTTGGTTGAATTGAAAAAGAAAGTGATTAAAGCATGGAAAGACATAATAAAAGACTATATTAAATCTACCAACATTTCAAATAAAATTCTTTTATGTGTGCTGA
ATCTTGCACGACTCTCCGACCTCTTCTATAAAAAAGAAGATGGTTACACATTTGTTGATGGAGCAACCAAACATTTCATTACCTCTCTCATTATAGAACCTTTACCAAAT
TGA
Protein sequenceShow/hide protein sequence
MNKEIKMSGLYIIFEQERGDVGSAVECYMKEYGISEEETLVELKKKVIKAWKDIIKDYIKSTNISNKILLCVLNLARLSDLFYKKEDGYTFVDGATKHFITSLIIEPLPN