; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G014010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G014010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description(-)-germacrene D synthase-like
Genome locationchr07:20456732..20462085
RNA-Seq ExpressionLsi07G014010
SyntenyLsi07G014010
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650452.2 (-)-germacrene D synthase isoform X1 [Cucumis sativus]1.3e-4072.95Show/hide
Query:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY
        EA++R   AYLVEAKW  EGYVPT+EEYMNVG +S+G YV ALV FLALGN ASKEVF WVQ  PMLLKA G+I RLMNDITSHKF QE+ HV  AVECY
Subjt:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY

Query:  MKQYGITKGEAIAELKRQVEEA
        MKQYG+T+GEAI EL ++V EA
Subjt:  MKQYGITKGEAIAELKRQVEEA

XP_031738277.1 (-)-germacrene D synthase isoform X2 [Cucumis sativus]1.3e-4072.95Show/hide
Query:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY
        EA++R   AYLVEAKW  EGYVPT+EEYMNVG +S+G YV ALV FLALGN ASKEVF WVQ  PMLLKA G+I RLMNDITSHKF QE+ HV  AVECY
Subjt:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY

Query:  MKQYGITKGEAIAELKRQVEEA
        MKQYG+T+GEAI EL ++V EA
Subjt:  MKQYGITKGEAIAELKRQVEEA

XP_038877743.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]3.9e-3767.83Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAYL+EAKWF + Y+PT+EEYM V  IS   YV+A +SF+ALGN ASKE+F W Q  PML+KA GVIGRL+NDI SHKFEQE+GHVASA+ECYMKQYG++
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        + EA+ ELK QV +A
Subjt:  KGEAIAELKRQVEEA

XP_038877743.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]4.7e-0662.22Show/hide
Query:  MSFQVLISDSKASNNASFNDGVPRPYANFQPSSWGDYFLSYNSHT
        MSFQ+++SDS   NN S + GVPR  ANFQPS+WGD+FLSY  +T
Subjt:  MSFQVLISDSKASNNASFNDGVPRPYANFQPSSWGDYFLSYNSHT

XP_038904196.1 sesquiterpene synthase-like [Benincasa hispida]1.5e-4180.87Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAYL EAKWF E YVPTIEEYM  G ISI  YVLA V FLALGN AS+EVF WVQG PMLLKAAGVI RLMNDITSHKFEQE+GHV +AV+CYMKQY  T
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        KGEAIAELKRQV EA
Subjt:  KGEAIAELKRQVEEA

XP_038904198.1 sesquiterpene synthase-like [Benincasa hispida]4.5e-4179.13Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAYL EAKWF E YVPTIEEYM VG ISIGIYV+A V F +LGN ASKEVF WVQG PMLLKA GVI RLMNDI+ H+FEQ++GHVASAVECYMKQYG+T
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        KGEA AELK QV EA
Subjt:  KGEAIAELKRQVEEA

TrEMBL top hitse value%identityAlignment
A0A0A0L782 Uncharacterized protein6.3e-4172.95Show/hide
Query:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY
        EA++R   AYLVEAKW  EGYVPT+EEYMNVG +S+G YV ALV FLALGN ASKEVF WVQ  PMLLKA G+I RLMNDITSHKF QE+ HV  AVECY
Subjt:  EAIQR---AYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECY

Query:  MKQYGITKGEAIAELKRQVEEA
        MKQYG+T+GEAI EL ++V EA
Subjt:  MKQYGITKGEAIAELKRQVEEA

A0A0A0L791 Uncharacterized protein3.9e-3563.03Show/hide
Query:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ
        +++ +AY +EAKWF EGYVP +EEYM V  IS    V A +SFL+LGN ASKEV+ W Q  P+LLKA GV+GRL+NDI SHKFEQE+GHVASAVECYMK+
Subjt:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ

Query:  YGITKGEAIAELKRQVEEA
        YG+++ EAI EL+++V  A
Subjt:  YGITKGEAIAELKRQVEEA

A0A6J1CP21 valencene synthase-like isoform X26.1e-3666.96Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAY  EAKWF EGYVPT+EEYM V  IS   ++ A  SFL +G+ AS EVF W +  P+LL A GVIGRLMNDI SHKFEQE+GHVASAVECYMKQYG++
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        +GEAI EL++QV +A
Subjt:  KGEAIAELKRQVEEA

A0A6J1CPK3 (-)-germacrene D synthase-like isoform X16.1e-3666.96Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAY  EAKWF EGYVPT+EEYM V  IS   ++ A  SFL +G+ AS EVF W +  P+LL A GVIGRLMNDI SHKFEQE+GHVASAVECYMKQYG++
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        +GEAI EL++QV +A
Subjt:  KGEAIAELKRQVEEA

A0A6J1G202 vetispiradiene synthase 2-like isoform X11.1e-3433.44Show/hide
Query:  ASNNASFNDG-VPRPYANFQPSSWGDYFLSYNSHTSAG-------------CGGGIRNSW--SNYVLHEIGWWSAIFGYWEYTMNQSILPLEEYF-----
        + +N SF+DG VPR +ANFQPS+WGDYF+SY+S+T                    + N +  ++    ++ WW  +    E         +E YF     
Subjt:  ASNNASFNDG-VPRPYANFQPSSWGDYFLSYNSHTSAG-------------CGGGIRNSW--SNYVLHEIGWWSAIFGYWEYTMNQSILPLEEYF-----

Query:  --------SKLIISLLLLVICMMHMPHS-----KSFKLFTEAIQ----------------------------------------------------RAYL
                 ++I++ ++ +  ++   +          LFTEAI+                                                    R Y 
Subjt:  --------SKLIISLLLLVICMMHMPHS-----KSFKLFTEAIQ----------------------------------------------------RAYL

Query:  VEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKGEA
        +EAKW+ EGYVPT+EEYM V  +S   Y+ A +SFL +G  AS+E F W++  PM+LKA+G+IGRLMNDITSHKFEQE+G V SAVECYMKQ+G+++ E 
Subjt:  VEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKGEA

Query:  IAELKRQVEEA
        +  L+ +V  A
Subjt:  IAELKRQVEEA

SwissProt top hitse value%identityAlignment
B2KSJ6 Alpha-farnesene synthase5.0e-2747.5Show/hide
Query:  TEAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNG-ASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYM
        T+ + R +LVEAKW KEGY PT+EEY+++  IS G  +L + + L +G+  A++++  W+   P +LKA+ +I RLMNDI SHKFEQE+GHVASA+ECYM
Subjt:  TEAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNG-ASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYM

Query:  KQYGITKGEAIAELKRQVEE
        +Q  +++ + +  L +Q++E
Subjt:  KQYGITKGEAIAELKRQVEE

B5A435 Sesquiterpene synthase2.5e-2651.33Show/hide
Query:  YLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKG
        Y+ EAKW  E YVPT EEYM V  ++ G   L  +S+L +G  ASKE F W+   P +++A+  + RLM+D+ SHKFEQE+GHVAS +ECYMKQYG+T+ 
Subjt:  YLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKG

Query:  EAIAELKRQVEEA
        EA  E ++Q+ +A
Subjt:  EAIAELKRQVEEA

F6M8H5 Probable sesquiterpene synthase1.1e-2650.44Show/hide
Query:  YLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKG
        Y+ EAKW  E YVPT +EYM+V  ++ G   L  +S+L +G  ASKE F W+   P +++A+  +GRLM+D  SHKFEQE+GHVAS +ECYMKQYG+T+ 
Subjt:  YLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGITKG

Query:  EAIAELKRQVEEA
        EA  E ++++ +A
Subjt:  EAIAELKRQVEEA

F6M8H7 Probable sesquiterpene synthase2.2e-2748.74Show/hide
Query:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ
        + I   Y+ EAKW  E YVPT +EYM+V  ++ G   L  +S+L +G  ASKE F W+   P +++A+  +GRLM+D+ SHKFEQE+GHVAS +ECYMKQ
Subjt:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ

Query:  YGITKGEAIAELKRQVEEA
        YG+T+ EA  E ++++ +A
Subjt:  YGITKGEAIAELKRQVEEA

Q6Q3H2 Valencene synthase5.9e-2851.3Show/hide
Query:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT
        RAY  EAKW  E +VP  EEYM V   S G  +LA  SF+ +G  A+KE F WV   P ++ ++  I RLM+DI SHKFEQ++GHV SAVECYMKQYG++
Subjt:  RAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGIT

Query:  KGEAIAELKRQVEEA
        + +  +E ++Q+E A
Subjt:  KGEAIAELKRQVEEA

Arabidopsis top hitse value%identityAlignment
AT1G31950.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein3.9e-1939.29Show/hide
Query:  IQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYG
        I +AY   AKW + G+V T +EYM VG ++ G+   A   F+ + +   KE F W+   P+++K    + RL ND+ +++ E  +G VA+ + CYMKQYG
Subjt:  IQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYG

Query:  ITKGEAIAELKR
        +TK EA  EL++
Subjt:  ITKGEAIAELKR

AT3G14540.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.0e-1939.29Show/hide
Query:  IQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYG
        I +AY    +W ++G+VPT +EYM VG ++ G+   A   F+ + +   KE F W+   P+L+ A  V+ R+ ND+ +++ E  +G VA+ + CYMKQYG
Subjt:  IQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYG

Query:  ITKGEAIAELKR
        +TK EA  EL++
Subjt:  ITKGEAIAELKR

AT3G32030.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.9e-2240.34Show/hide
Query:  TEAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMK
        T+++ RAYL  +KW  EGY+PT +EYM VG ++ G+   AL SF+A+ +   K ++ W    P +L+A  V+ R+ NDI +++ E  KG V + V  YM 
Subjt:  TEAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMK

Query:  QYGITKGEAIAELKRQVEE
        Q+G+TK EA+ EL++   +
Subjt:  QYGITKGEAIAELKRQVEE

AT4G20200.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein5.5e-2138.66Show/hide
Query:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ
        +A  +A +   KW +  ++P+ EEYM VG + + +Y      F+++G  A+KE F W++  P L++   + GRLMND+  ++ +  +G+V +AV CYMKQ
Subjt:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ

Query:  YGITKGEAIAELKRQVEEA
        YG+TK EA  EL + V  A
Subjt:  YGITKGEAIAELKRQVEEA

AT4G20230.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.3e-1938.79Show/hide
Query:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ
        +A  +A +  AKW +  +VP+ E+YM VG + I   V      +++G   +KE F W++  P L+++    GRLMNDI   + +  +G+V +AV CYMKQ
Subjt:  EAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQ

Query:  YGITKGEAIAELKRQV
        YG+T+ EA  EL++ V
Subjt:  YGITKGEAIAELKRQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTCAAGTACTTATATCAGATTCCAAGGCATCAAATAATGCCTCTTTCAATGATGGTGTTCCTCGTCCATATGCAAACTTTCAACCAAGTTCTTGGGGAGATTA
CTTCCTTTCCTATAATTCCCACACTTCGGCAGGATGTGGTGGAGGGATCAGAAATTCATGGAGCAATTATGTTTTGCACGAGATAGGGTGGTGGAGTGCTATATTTGGGT
ATTGGGAATATACTATGAACCAAAGTATTCTACCGCTAGAAGAATATTTCTCAAAATTAATTATTTCATTACTATTATTGGTGATATGTATGATGCATATGCCACACTCG
AAGAGCTTCAAACTTTTCACCGAAGCAATTCAAAGAGCTTATTTGGTGGAAGCTAAATGGTTCAAGGAAGGATATGTACCAACAATAGAAGAATACATGAATGTTGGTGG
AATTTCTATTGGCATCTATGTTTTGGCTTTAGTTTCGTTCCTAGCTTTGGGAAATGGTGCCTCAAAAGAGGTTTTTTGGTGGGTTCAAGGTGGCCCCATGCTTCTTAAAG
CAGCTGGAGTAATTGGCAGACTCATGAATGACATAACTTCCCACAAGTTTGAACAAGAAAAAGGTCATGTGGCTTCCGCAGTTGAGTGCTACATGAAACAATATGGAATA
ACAAAAGGAGAGGCCATAGCCGAACTGAAAAGGCAAGTGGAAGAAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTCAAGTACTTATATCAGATTCCAAGGCATCAAATAATGCCTCTTTCAATGATGGTGTTCCTCGTCCATATGCAAACTTTCAACCAAGTTCTTGGGGAGATTA
CTTCCTTTCCTATAATTCCCACACTTCGGCAGGATGTGGTGGAGGGATCAGAAATTCATGGAGCAATTATGTTTTGCACGAGATAGGGTGGTGGAGTGCTATATTTGGGT
ATTGGGAATATACTATGAACCAAAGTATTCTACCGCTAGAAGAATATTTCTCAAAATTAATTATTTCATTACTATTATTGGTGATATGTATGATGCATATGCCACACTCG
AAGAGCTTCAAACTTTTCACCGAAGCAATTCAAAGAGCTTATTTGGTGGAAGCTAAATGGTTCAAGGAAGGATATGTACCAACAATAGAAGAATACATGAATGTTGGTGG
AATTTCTATTGGCATCTATGTTTTGGCTTTAGTTTCGTTCCTAGCTTTGGGAAATGGTGCCTCAAAAGAGGTTTTTTGGTGGGTTCAAGGTGGCCCCATGCTTCTTAAAG
CAGCTGGAGTAATTGGCAGACTCATGAATGACATAACTTCCCACAAGTTTGAACAAGAAAAAGGTCATGTGGCTTCCGCAGTTGAGTGCTACATGAAACAATATGGAATA
ACAAAAGGAGAGGCCATAGCCGAACTGAAAAGGCAAGTGGAAGAAGCATGA
Protein sequenceShow/hide protein sequence
MSFQVLISDSKASNNASFNDGVPRPYANFQPSSWGDYFLSYNSHTSAGCGGGIRNSWSNYVLHEIGWWSAIFGYWEYTMNQSILPLEEYFSKLIISLLLLVICMMHMPHS
KSFKLFTEAIQRAYLVEAKWFKEGYVPTIEEYMNVGGISIGIYVLALVSFLALGNGASKEVFWWVQGGPMLLKAAGVIGRLMNDITSHKFEQEKGHVASAVECYMKQYGI
TKGEAIAELKRQVEEA