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Lsi07G014170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G014170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein ZAT3-like
Genome locationchr07:20695884..20696503
RNA-Seq ExpressionLsi07G014170
SyntenyLsi07G014170
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044653 - C2H2-type zinc-finger protein AZF1/2/3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN55978.1 hypothetical protein Csa_010625 [Cucumis sativus]3.4e-1244.44Show/hide
Query:  RGRKGIG-----SVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGG
        RG KGIG     +VA  +SSSS +S    EA+  SRF+  D ++ +++       +KK K           +I+E+ E+ K+YKCN C K + SHQALGG
Subjt:  RGRKGIG-----SVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGG

Query:  HKSSHYKPKFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN
        HKS H K K  L  S  +T+   QER+I NFDLNELP  EDD N
Subjt:  HKSSHYKPKFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN

PHT44057.1 hypothetical protein CQW23_18082 [Capsicum baccatum]4.0e-0531.13Show/hide
Query:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK------KLYKCNRCGKGFWSHQALGGHKS
        RGRK     A  + S       +      L+   D  +   +     K   N        ENE    K+ K      + YKCN CGK F +HQALGGHKS
Subjt:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK------KLYKCNRCGKGFWSHQALGGHKS

Query:  SHYKPKFQLLV-------------SPILTHIPQERRIPNFDLNELPPNEDD
        SH   KF++++                 +     +RI +FDLNELPP+ +D
Subjt:  SHYKPKFQLLV-------------SPILTHIPQERRIPNFDLNELPPNEDD

PHT77464.1 hypothetical protein T459_20986 [Capsicum annuum]5.2e-0531.37Show/hide
Query:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK-----KLYKCNRCGKGFWSHQALGGHKSS
        RGRK     A  + S       +      L+   D  +      +P K   N        ENE    K+ K     + YKCN CGK F +HQALGGH   
Subjt:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK-----KLYKCNRCGKGFWSHQALGGHKSS

Query:  HYKPKFQLLV-SPILTHI-------PQERRIPNFDLNELPPNEDDYNDNDNGE
            KF++++ +  +T+I          +RI +FDLNELPP+ +D   + N E
Subjt:  HYKPKFQLLV-SPILTHI-------PQERRIPNFDLNELPPNEDDYNDNDNGE

XP_008449183.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 [Cucumis melo]6.8e-1343.84Show/hide
Query:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK
        RG KGI  V    SSSSS S +      A ++ +    +       +KK K           +I+E+ E+KK+YKCN C K + SHQALGGHKS H K K
Subjt:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK

Query:  FQLLVSP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI
          L  S  + T   QER+I NFDLNELP  E D    DN E KASI
Subjt:  FQLLVSP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI

XP_022143488.1 zinc finger protein ZAT3-like [Momordica charantia]1.2e-0937.19Show/hide
Query:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT
        +SSSSS + + P   +++  R  +++ ++ ++            S    N+ H+    KK  +Y+CN CGK FWS QALGGHKSSHYKP+       ++ 
Subjt:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT

Query:  HIPQERRIPNFDLNELPPNED
             RR  +FDLNELPP +D
Subjt:  HIPQERRIPNFDLNELPPNED

TrEMBL top hitse value%identityAlignment
A0A0A0L2N1 Uncharacterized protein1.6e-1244.44Show/hide
Query:  RGRKGIG-----SVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGG
        RG KGIG     +VA  +SSSS +S    EA+  SRF+  D ++ +++       +KK K           +I+E+ E+ K+YKCN C K + SHQALGG
Subjt:  RGRKGIG-----SVAVTTSSSSSTS----EAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGG

Query:  HKSSHYKPKFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN
        HKS H K K  L  S  +T+   QER+I NFDLNELP  EDD N
Subjt:  HKSSHYKPKFQLLVSPILTH-IPQERRIPNFDLNELPPNEDDYN

A0A1S3BLH2 LOW QUALITY PROTEIN: uncharacterized protein LOC1034911333.3e-1343.84Show/hide
Query:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK
        RG KGI  V    SSSSS S +      A ++ +    +       +KK K           +I+E+ E+KK+YKCN C K + SHQALGGHKS H K K
Subjt:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK

Query:  FQLLVSP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI
          L  S  + T   QER+I NFDLNELP  E D    DN E KASI
Subjt:  FQLLVSP-ILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASI

A0A2G2WFN4 Uncharacterized protein1.9e-0531.13Show/hide
Query:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK------KLYKCNRCGKGFWSHQALGGHKS
        RGRK     A  + S       +      L+   D  +   +     K   N        ENE    K+ K      + YKCN CGK F +HQALGGHKS
Subjt:  RGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVK------KLYKCNRCGKGFWSHQALGGHKS

Query:  SHYKPKFQLLV-------------SPILTHIPQERRIPNFDLNELPPNEDD
        SH   KF++++                 +     +RI +FDLNELPP+ +D
Subjt:  SHYKPKFQLLV-------------SPILTHIPQERRIPNFDLNELPPNEDD

A0A6J1CQU4 zinc finger protein ZAT3-like5.8e-1037.19Show/hide
Query:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT
        +SSSSS + + P   +++  R  +++ ++ ++            S    N+ H+    KK  +Y+CN CGK FWS QALGGHKSSHYKP+       ++ 
Subjt:  TSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKK--LYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILT

Query:  HIPQERRIPNFDLNELPPNED
             RR  +FDLNELPP +D
Subjt:  HIPQERRIPNFDLNELPPNED

M1C052 Tapetum-specific zinc finger protein 12.5e-0531.28Show/hide
Query:  KHGRESNHQSPSLLLSRHRPRLRLCRAGPSLPRGRKG---IGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIH
        K GR+ N +    L       L L   G S+  G  G   +  +  T S+ S TS+AE     A ++ +D RK         KK+      + + ++   
Subjt:  KHGRESNHQSPSLLLSRHRPRLRLCRAGPSLPRGRKG---IGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIH

Query:  ELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTHIPQER------------RIPNFDLNELPPNEDD
              + +KCN CGK F +HQALGGHKSSH K +  +  S +   I +E             RI +FDLNELP + +D
Subjt:  ELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTHIPQER------------RIPNFDLNELPPNEDD

SwissProt top hitse value%identityAlignment
Q9SHD0 Zinc finger protein ZAT44.6e-0434.44Show/hide
Query:  SSSSTSEAEPRSRFALI----DRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK
        SS+S +  E    F LI    D+  Q+K         KK++   +D    ++E ++  + +  +KC  CGK F S+QALGGH++SH K K
Subjt:  SSSSTSEAEPRSRFALI----DRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK

Q9SSW1 Zinc finger protein AZF14.6e-0473.08Show/hide
Query:  YKCNRCGKGFWSHQALGGHKSSHYKP
        YKC  CGK F S+QALGGHK+SH KP
Subjt:  YKCNRCGKGFWSHQALGGHKSSHYKP

Arabidopsis top hitse value%identityAlignment
AT2G45120.1 C2H2-like zinc finger protein3.3e-0534.44Show/hide
Query:  SSSSTSEAEPRSRFALI----DRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK
        SS+S +  E    F LI    D+  Q+K         KK++   +D    ++E ++  + +  +KC  CGK F S+QALGGH++SH K K
Subjt:  SSSSTSEAEPRSRFALI----DRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKPK

AT3G49930.1 C2H2 and C2HC zinc fingers superfamily protein6.6e-0655.26Show/hide
Query:  NEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP
        + +  L + +K YKC+ CGK F S+QALGGHK+SH KP
Subjt:  NEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYKP

AT3G60580.1 C2H2-like zinc finger protein4.7e-0434.12Show/hide
Query:  SSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYK
        SS+S T+  E  +   ++   D+ K+N  +   +++ +   ++   G N+I+     K  YKC  CGK F S+QALGGH++SH K
Subjt:  SSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKCNRCGKGFWSHQALGGHKSSHYK

AT5G56200.1 C2H2 type zinc finger transcription factor family9.5e-0537.18Show/hide
Query:  CNRCGKGFWSHQALGGHKSSHYKPKFQLLV----------------SPILTHIPQE-----RRIPNFDLNELPPNEDD
        CN C K F + QALGGHK  H+      +                 S  +T   QE     RR+  FDLNELPPNE++
Subjt:  CNRCGKGFWSHQALGGHKSSHYKPKFQLLV----------------SPILTHIPQE-----RRIPNFDLNELPPNEDD

AT5G67450.1 zinc-finger protein 13.3e-0573.08Show/hide
Query:  YKCNRCGKGFWSHQALGGHKSSHYKP
        YKC  CGK F S+QALGGHK+SH KP
Subjt:  YKCNRCGKGFWSHQALGGHKSSHYKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAACATGGAAGAGAATCCAACCACCAATCTCCATCTCTTCTTCTATCTCGTCATCGTCCTCGTCTTCGTCTTTGCCGAGCTGGTCCCTCACTGCCGAGGGGTCG
TAAGGGTATTGGCTCTGTAGCTGTTACTACCTCCTCCTCTTCTTCAACTTCTGAAGCTGAACCCAGATCTCGTTTTGCCCTAATCGATAGGATGGATCAACGAAAAGAGA
ATAATGTGAGTAGTCTTCCAATGAAGAAAAGGAAGAATGGTTGGGATGATTCCGTAATAGGTGAAAATGAAATCCATGAGCTGAAAGAGGTGAAGAAATTATATAAATGC
AATAGGTGTGGAAAAGGGTTTTGGTCTCACCAAGCATTGGGAGGCCATAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCCCCAATTTTGACTCACATTCC
TCAAGAGAGGAGGATCCCTAATTTTGATCTCAATGAGCTCCCACCGAACGAAGACGACTATAACGACAACGACAACGGAGAAGCTAAAGCAAGCATAGCTTATCAGGTCA
GATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAACATGGAAGAGAATCCAACCACCAATCTCCATCTCTTCTTCTATCTCGTCATCGTCCTCGTCTTCGTCTTTGCCGAGCTGGTCCCTCACTGCCGAGGGGTCG
TAAGGGTATTGGCTCTGTAGCTGTTACTACCTCCTCCTCTTCTTCAACTTCTGAAGCTGAACCCAGATCTCGTTTTGCCCTAATCGATAGGATGGATCAACGAAAAGAGA
ATAATGTGAGTAGTCTTCCAATGAAGAAAAGGAAGAATGGTTGGGATGATTCCGTAATAGGTGAAAATGAAATCCATGAGCTGAAAGAGGTGAAGAAATTATATAAATGC
AATAGGTGTGGAAAAGGGTTTTGGTCTCACCAAGCATTGGGAGGCCATAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCCCCAATTTTGACTCACATTCC
TCAAGAGAGGAGGATCCCTAATTTTGATCTCAATGAGCTCCCACCGAACGAAGACGACTATAACGACAACGACAACGGAGAAGCTAAAGCAAGCATAGCTTATCAGGTCA
GATAA
Protein sequenceShow/hide protein sequence
MQKHGRESNHQSPSLLLSRHRPRLRLCRAGPSLPRGRKGIGSVAVTTSSSSSTSEAEPRSRFALIDRMDQRKENNVSSLPMKKRKNGWDDSVIGENEIHELKEVKKLYKC
NRCGKGFWSHQALGGHKSSHYKPKFQLLVSPILTHIPQERRIPNFDLNELPPNEDDYNDNDNGEAKASIAYQVR