; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G014190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G014190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6-like
Genome locationchr07:20712783..20716798
RNA-Seq ExpressionLsi07G014190
SyntenyLsi07G014190
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR013087 - Zinc finger C2H2-type
IPR016049 - RNA polymerase Rpc34-like
IPR036236 - Zinc finger C2H2 superfamily
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13079.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]2.4e-9892.39Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN S G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVEL+REQIEEIVNAL+LDNQV EVKSSGFGEFEFIP+GKICYKYC+Q GGLKGEPKTGAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

TYK19400.1 DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]3.6e-10294.42Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPK GAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

XP_004148278.1 DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus]7.3e-10394.92Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPKTGAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

XP_008448982.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo]3.6e-10294.42Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPK GAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

XP_038905079.1 DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]6.6e-10495.96Show/hide
Query:  MKNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINT
        MKN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQA+GL+K+VQHYQNKGKKFY+S DFEPAKELTGGNWYRDGELDKDYINT
Subjt:  MKNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINT

Query:  LKQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        LKQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
Subjt:  LKQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

TrEMBL top hitse value%identityAlignment
A0A0A0L5W6 Uncharacterized protein3.5e-10394.92Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPKTGAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like1.8e-10294.42Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPK GAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

A0A5A7UBI4 DNA-directed RNA polymerase III subunit RPC6-like1.2e-9892.39Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN S G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVEL+REQIEEIVNAL+LDNQV EVKSSGFGEFEFIP+GKICYKYC+Q GGLKGEPKTGAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

A0A5D3CS47 DNA-directed RNA polymerase III subunit RPC6-like1.2e-9892.39Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN S G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVEL+REQIEEIVNAL+LDNQV EVKSSGFGEFEFIP+GKICYKYC+Q GGLKGEPKTGAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like1.8e-10294.42Show/hide
Query:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL
        KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTL
Subjt:  KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTL

Query:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
        KQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGGLKGEPK GAM SIPCGV
Subjt:  KQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

SwissProt top hitse value%identityAlignment
O94553 Probable DNA-directed RNA polymerase III subunit rpc64.3e-1338.24Show/hide
Query:  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ
        G E+++Y  I +  + GI    +   T    SVV + LKSL++K L+K ++  +N  +K YM  D  P+ ELTGG W+ D ELD ++I  LK+V  R + 
Subjt:  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ

Query:  RK
         K
Subjt:  RK

Q2T9S3 DNA-directed RNA polymerase III subunit RPC61.0e-1432.1Show/hide
Query:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR
        G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK YM  + +P + +TGG WY D + + +++  L Q C +
Subjt:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR

Query:  MIQRKKVITIEGIV-------ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV
         +Q K     E           SF  S          G  KVELS E IE I+N L+ D +V
Subjt:  MIQRKKVITIEGIV-------ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV

Q86JM3 DNA-directed RNA polymerase III subunit rpc62.3e-1428.85Show/hide
Query:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR
        GL  ++ ++Y LI +  + G  T ++K  + + +  +TK LK+L+++ LIK V+  Q+  KK YM  + EP++E+TGG  Y D   D  YI  +K     
Subjt:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR

Query:  MIQRKKVITIEGIVESFKQ--SGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFG
         +  K  + +  I+   ++    A    L  E I+ +VN ++ D  + E++ +  G
Subjt:  MIQRKKVITIEGIVESFKQ--SGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFG

Q921X6 DNA-directed RNA polymerase III subunit RPC67.8e-1532.1Show/hide
Query:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR
        G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK YM  + +P + +TGG WY D + + +++  L Q C +
Subjt:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR

Query:  MIQRKKVITIEG----IVE---SFKQS----------GAFKVELSREQIEEIVNALLLDNQV
         +Q K     E     +++   SF  S          G  KVELS E IE I+N L+ D +V
Subjt:  MIQRKKVITIEG----IVE---SFKQS----------GAFKVELSREQIEEIVNALLLDNQV

Q9H1D9 DNA-directed RNA polymerase III subunit RPC61.3e-1432.1Show/hide
Query:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR
        G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK YM  + +P + +TGG WY D + + +++  L Q C +
Subjt:  GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCAR

Query:  MIQRKKVITIEGIV-------ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV
         +Q K     E           SF  S          G  KVELS E IE I+N L+ D +V
Subjt:  MIQRKKVITIEGIV-------ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV

Arabidopsis top hitse value%identityAlignment
AT2G17180.1 C2H2-like zinc finger protein1.1e-0830.58Show/hide
Query:  CKVCNREFNSIKALYGHMRSHPNRTWKGIQPPISIS---SSSSISSSSSSLPSWSLTAKRGRKGIGSVSVAVA----ASSSSSVSEAKP--------KSH
        C  C ++F S+KAL+GHMR HP R W+GI PP +     +S++ SSSSS  PS           I S  + +A     + SS V E            SH
Subjt:  CKVCNREFNSIKALYGHMRSHPNRTWKGIQPPISIS---SSSSISSSSSSLPSWSLTAKRGRKGIGSVSVAVA----ASSSSSVSEAKP--------KSH

Query:  FTLIDRVDQRKE-------NNVSSPPTKRMKKMMNDWDNSVIGENEIHELKEVKKL----YKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRV
          L       K+        N++  P     + + D D            K VK +    ++CN C + F S QALGGH   H++        D +E +V
Subjt:  FTLIDRVDQRKE-------NNVSSPPTKRMKKMMNDWDNSVIGENEIHELKEVKKL----YKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRV

Query:  PNFDLN
           DLN
Subjt:  PNFDLN

AT3G60580.1 C2H2-like zinc finger protein3.0e-0629.09Show/hide
Query:  CKVCNREFNSIKALYGHMRSHPNRTWKGIQPP--ISISSSSSISS-------------------SSSSLPSWSLTAKRGRKGIGSVSVAVAASSSSSVSE
        C+VC + F + KAL GHMRSH + + +  Q P  +S  + S +SS                   S SS    +LT KR ++    +   V     +S   
Subjt:  CKVCNREFNSIKALYGHMRSHPNRTWKGIQPP--ISISSSSSISS-------------------SSSSLPSWSLTAKRGRKGIGSVSVAVAASSSSSVSE

Query:  AKPKSHFTLIDRVDQRKENNVSSPPT------------KRMKKMMNDWDNSVIGENEIHELKE---------VKKLYKCNKCGKGFWSHQALGGHKSSHY
         KP+S        DQ   ++ +S  T             R K   N  +  V+ E E  E  E          K  YKC  CGK F S+QALGGH++SH 
Subjt:  AKPKSHFTLIDRVDQRKENNVSSPPT------------KRMKKMMNDWDNSVIGENEIHELKE---------VKKLYKCNKCGKGFWSHQALGGHKSSHY

Query:  KPKFQLLVSDTQERRVPNFD
        K +  +  + T++R    +D
Subjt:  KPKFQLLVSDTQERRVPNFD

AT4G35280.1 C2H2-like zinc finger protein7.2e-0827.14Show/hide
Query:  KTKSSCKVCNREFNSIKALYGHMRSHPNRTWKGIQPP--ISISSSSSISSSSSSLPSWSLTAKRGRKGIGS--VSVAVAASSSSSVSEAKPKSHFTLIDR
        K    C  C R+F S KAL+GHMR HP R W+GI PP    + +++S    +  LP+W          + S  + ++    SSSS+   +      +   
Subjt:  KTKSSCKVCNREFNSIKALYGHMRSHPNRTWKGIQPP--ISISSSSSISSSSSSLPSWSLTAKRGRKGIGS--VSVAVAASSSSSVSEAKPKSHFTLIDR

Query:  VDQRKENNVSSPPTKRMKKMMNDWDNSVI-----GENEIHELKEVKKLYKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRVPNFDLNELPPNE
              +  S    K    + N  D+ +      G +   ++      +KCN C + F S QALGGH   H++ + + ++S          DLN +PP  
Subjt:  VDQRKENNVSSPPTKRMKKMMNDWDNSVI-----GENEIHELKEVKKLYKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRVPNFDLNELPPNE

Query:  DDDDNNDDNG
         D   +D +G
Subjt:  DDDDNNDDNG

AT5G23710.1 DNA binding;DNA-directed RNA polymerases3.7e-3642.42Show/hide
Query:  SGGGLIGQ--EKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLK
        S GG + +  EK L DLI   Q  G   F++KRE     ++VT+ + SL+ K LIK V +  NKG K Y++ +FEP  ELTGG WY DG LD   I  LK
Subjt:  SGGGLIGQ--EKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLK

Query:  QVCARMIQ--RKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV
          C  +++  R++V+T+E +   F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    +G++CY+   +  G  GEP+ GA  SIPCGV
Subjt:  QVCARMIQ--RKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGV

AT5G56200.1 C2H2 type zinc finger transcription factor family1.3e-0924.59Show/hide
Query:  SCKVCNREFNSIKALYGHMRSHPNRTWKGIQP-------PISISSSSSISSSS--------------------------------------SSLPSWSLT
        +C VC ++F S+KALYGHMR HP+R WKG+ P       P+  SSSS++                                           S+  WS  
Subjt:  SCKVCNREFNSIKALYGHMRSHPNRTWKGIQP-------PISISSSSSISSSS--------------------------------------SSLPSWSLT

Query:  AKRGRKG-----------------------IGSVSVAVAASSSSSVSEAKPKSHFTL----IDRVDQRKENNVSSPPTKRMKKMMNDWDNSVIGENEIHE
         KRGR+G                        G + +A  A ++++++ A+  +  ++    ++ V +RK+        KR+ +M  +   S   ++++ +
Subjt:  AKRGRKG-----------------------IGSVSVAVAASSSSSVSEAKPKSHFTL----IDRVDQRKENNVSSPPTKRMKKMMNDWDNSVIGENEIHE

Query:  LKEV----------KKLYKCNKCGKGFWSHQALGGHKSSHYKPK
        +  V          ++ + C  C K F S+QALGGH++SH K K
Subjt:  LKEV----------KKLYKCNKCGKGFWSHQALGGHKSSHYKPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATTGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTTGCACTTTCGACATGAAAAGAGAGAC
AAAGTTTGCTGAAAGTGTGGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGGTGGTTCAACATTATCAAAACAAAGGCAAGAAGTTCTACATGTCAA
ACGACTTCGAACCTGCTAAGGAATTAACCGGTGGTAATTGGTATCGCGACGGGGAGCTTGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAG
AGGAAGAAGGTGATTACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGTT
GTTGGACAATCAAGTGATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCCGTTGGGAAGATTTGTTATAAGTACTGTACTCAAGGAGGAGGCCTCAAAG
GAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTTCATTGGGAAGGTGAAGAAGAAGAAGAAGAAGAAAAGACCAAATCTTCATGCAAAGTATGCAATAGA
GAATTCAATTCCATCAAAGCATTGTATGGTCATATGAGGTCTCATCCCAATAGGACATGGAAGGGAATCCAACCACCAATCTCCATCTCTTCCTCTTCTTCTATATCGTC
CTCGTCCTCGTCTTTGCCCAGCTGGTCCCTCACCGCCAAGAGGGGCCGTAAAGGCATTGGCTCTGTTTCTGTTGCTGTTGCCGCCTCCTCCTCTTCTTCAGTTTCTGAAG
CTAAACCCAAATCTCATTTTACCCTAATCGATAGAGTGGATCAACGAAAAGAGAATAATGTGAGTAGTCCTCCAACGAAGAGAATGAAGAAAATGATGAATGATTGGGAT
AATTCCGTAATAGGTGAAAATGAAATCCATGAGCTCAAAGAAGTGAAGAAATTATATAAATGCAATAAGTGTGGAAAAGGGTTTTGGTCTCACCAAGCGTTGGGAGGCCA
TAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCAGATACTCAAGAGAGGAGGGTCCCTAATTTTGATCTCAATGAGCTCCCACCGAATGAAGACGACGACG
ACAACAACGACGACAACGGAGAAGCTAAAGCAAACATAGCTTATCAGGTTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATTGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTTGCACTTTCGACATGAAAAGAGAGAC
AAAGTTTGCTGAAAGTGTGGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGGTGGTTCAACATTATCAAAACAAAGGCAAGAAGTTCTACATGTCAA
ACGACTTCGAACCTGCTAAGGAATTAACCGGTGGTAATTGGTATCGCGACGGGGAGCTTGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAG
AGGAAGAAGGTGATTACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGTT
GTTGGACAATCAAGTGATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCCGTTGGGAAGATTTGTTATAAGTACTGTACTCAAGGAGGAGGCCTCAAAG
GAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTTCATTGGGAAGGTGAAGAAGAAGAAGAAGAAGAAAAGACCAAATCTTCATGCAAAGTATGCAATAGA
GAATTCAATTCCATCAAAGCATTGTATGGTCATATGAGGTCTCATCCCAATAGGACATGGAAGGGAATCCAACCACCAATCTCCATCTCTTCCTCTTCTTCTATATCGTC
CTCGTCCTCGTCTTTGCCCAGCTGGTCCCTCACCGCCAAGAGGGGCCGTAAAGGCATTGGCTCTGTTTCTGTTGCTGTTGCCGCCTCCTCCTCTTCTTCAGTTTCTGAAG
CTAAACCCAAATCTCATTTTACCCTAATCGATAGAGTGGATCAACGAAAAGAGAATAATGTGAGTAGTCCTCCAACGAAGAGAATGAAGAAAATGATGAATGATTGGGAT
AATTCCGTAATAGGTGAAAATGAAATCCATGAGCTCAAAGAAGTGAAGAAATTATATAAATGCAATAAGTGTGGAAAAGGGTTTTGGTCTCACCAAGCGTTGGGAGGCCA
TAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCAGATACTCAAGAGAGGAGGGTCCCTAATTTTGATCTCAATGAGCTCCCACCGAATGAAGACGACGACG
ACAACAACGACGACAACGGAGAAGCTAAAGCAAACATAGCTTATCAGGTTAGATAA
Protein sequenceShow/hide protein sequence
MKNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ
RKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGVHWEGEEEEEEEKTKSSCKVCNR
EFNSIKALYGHMRSHPNRTWKGIQPPISISSSSSISSSSSSLPSWSLTAKRGRKGIGSVSVAVAASSSSSVSEAKPKSHFTLIDRVDQRKENNVSSPPTKRMKKMMNDWD
NSVIGENEIHELKEVKKLYKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRVPNFDLNELPPNEDDDDNNDDNGEAKANIAYQVR