CuGenDBv2

Gene ID	Lsi07G014700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Genome location	chr07:21417388..21419398
RNA-Seq Expression	Lsi07G014700
Synteny	Lsi07G014700
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001911 - Ribosomal protein S21 IPR038380 - Ribosomal protein S21 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAL35983.1 ribosome-like protein, partial [Cucumis sativus]

6.0e-86

93.99

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N AA QFQTLKS+DGSV+L PQQGPNHSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E+IPS
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS

KAA0042889.1 hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa]

2.9e-88

97.25

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPN  AAQFQTLKS+DGSV+LKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE+IP
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP

XP_004145671.1 30S ribosomal protein S21, chloroplastic [Cucumis sativus]

6.0e-86

93.99

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N AA QFQTLKS+DGSV+L PQQGPNHSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E+IPS
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS

XP_008450090.2 PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]

1.4e-87

96.7

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPN  AAQFQTLKS+DGSV+LKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE +IP
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP

XP_038900112.1 30S ribosomal protein S21, chloroplastic [Benincasa hispida]

9.2e-87

95.65

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ---AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNE
        MASLSSFFSFLLPSKPPPPKPHQPLI SSPSP N    AAQ QTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ---AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNE

Query:  PEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
        PEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
Subjt:  PEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDL7 Uncharacterized protein

2.9e-86

93.99

Show/hide

Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N AA QFQTLKS+DGSV+L PQQGPNHSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E+IPS
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS

A0A1S3BNG4 uncharacterized protein LOC103491780

6.9e-88

96.7

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPN  AAQFQTLKS+DGSV+LKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE +IP
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP

A0A5D3C287 Uncharacterized protein

1.4e-88

97.25

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPN  AAQFQTLKS+DGSV+LKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE+IP
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIP

A0A6J1J5C2 30S ribosomal protein S21, chloroplastic-like

1.1e-77

90.45

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKP QPLIA SPSP NQ AAQFQTLKS+DGSV+L PQQ P HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQ-AAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE
        ERLLNRFRREVMRAGVIQECKRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE

Q8VWX5 Ribosome-like protein (Fragment)

2.9e-86

93.99

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE
        MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N AA QFQTLKS+DGSV+L PQQGPNHSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPE
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAA-QFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS
        ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E+IPS
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS

SwissProt top hits

e value

%identity

Alignment

B8GPU0 30S ribosomal protein S21

4.6e-04

46.43

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Query:  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR
        V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Subjt:  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR

P48949 30S ribosomal protein S21

2.7e-04

46.55

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Query:  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR
        QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Subjt:  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR

P82024 30S ribosomal protein S21, chloroplastic

3.8e-35

52.69

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Query:  MASLSSFFSFLLPSKPP----PPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPN----HSEPLSAELASVICPSLAFANTMFFRSAYNVQVI
        MAS SS  +FL P  P     PP       +S+P  PN      +L S+  S+S+  ++  N      E    +L +V+CPSLAF+NT++FRSAYNVQV+
Subjt:  MASLSSFFSFLLPSKPP----PPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPN----HSEPLSAELASVICPSLAFANTMFFRSAYNVQVI

Query:  VDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE
        VDDNE EERLLNRFRREVMRAGVIQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD+PE
Subjt:  VDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE

Arabidopsis top hits

e value

%identity

Alignment

AT3G27160.1 Ribosomal protein S21 family protein

1.2e-39

53.11

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Query:  SLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERL
        SL+SF SF+ P K    KP  P   + PSP     +   L  +    S+  ++  + +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL
Subjt:  SLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERL

Query:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLP
        +NRFRREVMR GVIQECKRRR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P
Subjt:  LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLP

AT5G63300.1 Ribosomal protein S21 family protein

2.7e-20

38.04

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPE
        + SLS   S LL SKPP P   +P+   S S   + +Q  ++ +K  +          H + ++     V  PSLA AN +FF+S+ YNV+V+  D E E
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEADDDNWDLPEEE
        E+L+N F+R   RAGV+QE +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+LP E+
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEADDDNWDLPEEE

AT5G63300.2 Ribosomal protein S21 family protein

5.3e-16

40.82

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Query:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPE
        + SLS   S LL SKPP P   +P+   S S   + +Q  ++ +K  +          H + ++     V  PSLA AN +FF+S+ YNV+V+  D E E
Subjt:  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPE

Query:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR
        E+L+N F+R   RAGV+QE +RRRFFE++ + + RKT+EAAK+ R+R
Subjt:  ERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCATCAGCCCCTCATTGCCTCCTCTCCTTCTCCGCCAAATCAAGCCGC
TCAGTTTCAAACACTCAAATCCAAGGATGGATCGGTTTCCCTAAAGCCCCAACAGGGTCCCAACCATTCCGAGCCCTTATCGGCGGAATTGGCCTCTGTTATCTGTCCGT
CCCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTCAACAGATTCCGGCGAGAGGTT
ATGAGGGCCGGCGTAATTCAGGAGTGCAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTCAGGAAACGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCG
CCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCAGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAAACATTCCTTCTTAA

mRNA sequence

Show/hide mRNA sequence

AAAAAATAAAAAAATAAAAAAATAAAAAAAAAATGGGAAACTTATCCACAGAGAAGAGAGATAGAGAAGGAGAGAAAGAGATGATCCCATCAAGAGAGGTCTCCAATTTA
CAAACTTGAGAGTGAGAAAAGATTTGGGTTTTAGGAAGAAGAAAAGTTCCATCAAAAGTCCAAAACAGGGAGCAGATAAGACTGAATTCCAACCAGAGCCATCCATGGCT
TCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCATCAGCCCCTCATTGCCTCCTCTCCTTCTCCGCCAAATCAAGCCGCTCAGTT
TCAAACACTCAAATCCAAGGATGGATCGGTTTCCCTAAAGCCCCAACAGGGTCCCAACCATTCCGAGCCCTTATCGGCGGAATTGGCCTCTGTTATCTGTCCGTCCCTGG
CCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTCAACAGATTCCGGCGAGAGGTTATGAGG
GCCGGCGTAATTCAGGAGTGCAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTCAGGAAACGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACA
GGCAAGATTTACACCACAGAACAAGCAGGATGTGCCAGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAAACATTCCTTCTTAACCTAATC
CAAAAGTTCACCCTCACCAAAATGTTTAATGTTTTCTCGTCATCTTTTGATTTTGGGAAGCTGTTAGTACTCTGTAATCTAAGTTGTTTTCCATGTAATATCTTTTTAGT
TGAGAAGTTTTTGCAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTAC

Protein sequence

Show/hide protein sequence

MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNQAAQFQTLKSKDGSVSLKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREV
MRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPS

Lsi07G014700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome