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Lsi07G014860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G014860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr07:21673901..21679830
RNA-Seq ExpressionLsi07G014860
SyntenyLsi07G014860
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059710.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-2047.41Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L   V+ + + +  ++ LWLSLE RYSS TR ++L+L+ A Y++KK P ES++QY  ++K LVD L AA V +++E+ L+H LNG P  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAE
           +SL EL  LL +E
Subjt:  DTTLSLAELEVLLNAE
KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-2248.33Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L    + + + + +++ LWLSLE RYSS TRS++L+L+ A YT+ K P+ES++QY  ++K LVD LAAA V +++E+ L+H LNGLP  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAETKIV
           +SL EL  LL +E  I+
Subjt:  DTTLSLAELEVLLNAETKIV
TYJ95794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-1947.79Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L    + + + + +++ LWLSL+ RYS  TRS++L+L+ A YT+KK P+ES++QY  ++K LVD LAAA V +++E+ L+H LNGL + F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLL
           +SL EL  LL
Subjt:  DTTLSLAELEVLL
TYK26148.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-2047.41Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L   V+ + + +  ++ LWLSLE RYSS TR ++L+L+ A Y++KK P ES++QY  ++K LVD L AA V +++E+ L+H LNG P  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAE
           +SL EL  LL +E
Subjt:  DTTLSLAELEVLLNAE
XP_016902970.1 PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo]4.8e-2052.38Show/hide
Query:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV
        + +++ LWLSLE RYSS T+S++L+L  A YT+KK P+ES++QY  ++K  VD LAAA + ++NE  L+H LNGLP  F AFRT I TR   +SL EL  
Subjt:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV

Query:  LLNAE
        LL +E
Subjt:  LLNAE
TrEMBL top hitse value%identityAlignment
A0A1S4E4S1 uncharacterized protein LOC1079919682.3e-2052.38Show/hide
Query:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV
        + +++ LWLSLE RYSS T+S++L+L  A YT+KK P+ES++QY  ++K  VD LAAA + ++NE  L+H LNGLP  F AFRT I TR   +SL EL  
Subjt:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV

Query:  LLNAE
        LL +E
Subjt:  LLNAE
A0A5A7T8B0 Retrotransposon protein2.3e-2052.38Show/hide
Query:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV
        + +++ LWLSLE RYSS T+S++L+L  A YT+KK P+ES++QY  ++K  VD LAAA + ++NE  L+H LNGLP  F AFRT I TR   +SL EL  
Subjt:  ATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEV

Query:  LLNAE
        LL +E
Subjt:  LLNAE
A0A5A7UX39 Retrotransposon protein3.0e-2047.41Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L   V+ + + +  ++ LWLSLE RYSS TR ++L+L+ A Y++KK P ES++QY  ++K LVD L AA V +++E+ L+H LNG P  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAE
           +SL EL  LL +E
Subjt:  DTTLSLAELEVLLNAE
A0A5A7UZE5 Putative mitochondrial protein1.1e-2248.33Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L    + + + + +++ LWLSLE RYSS TRS++L+L+ A YT+ K P+ES++QY  ++K LVD LAAA V +++E+ L+H LNGLP  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAETKIV
           +SL EL  LL +E  I+
Subjt:  DTTLSLAELEVLLNAETKIV
A0A5D3DRG9 Retrotransposon protein3.0e-2047.41Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L   V+ + + +  ++ LWLSLE RYSS TR ++L+L+ A Y++KK P ES++QY  ++K LVD L AA V +++E+ L+H LNG P  F+AFRT I TR
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAE
           +SL EL  LL +E
Subjt:  DTTLSLAELEVLLNAE
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-0831.39Show/hide
Query:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR
        L D V+ N +   TAR +W  LE+ Y SKT ++ L LK   Y +      +   +      L+  LA  GVKI+ E   + +LN LP  +    T IL  
Subjt:  LEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTR

Query:  DTTLSLAELEVLLNAETKIVGFPQINGRS-SSNGDGR
         TT+ L ++   L    K+   P+  G++  + G GR
Subjt:  DTTLSLAELEVLLNAETKIVGFPQINGRS-SSNGDGR
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.7e-0529.73Show/hide
Query:  QATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAEL-
        +ATTA ++W +L   Y++ +   V +L+        K T++++ Y + +    D LA  G  +D+++ +  +L  LP E+      I  +DT  +L E+ 
Subjt:  QATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAEL-

Query:  EVLLNAETKIV
        E LLN E+KI+
Subjt:  EVLLNAETKIV
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)2.3e-0425.66Show/hide
Query:  QVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTT
        Q   + + ++T+R++WL ++N++ +   +  L L     T K      V  Y+RK+K L D L    V + +   ++++LNGL  +F     +I  R   
Subjt:  QVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTT

Query:  LSLAELEVLLNAE
         S  +   +L  E
Subjt:  LSLAELEVLLNAE
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.7e-0430.1Show/hide
Query:  TARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEVLL
        TAR+LWLSLEN +     +  L+ +    T       SV +Y +K+K L D L      I +   ++H+LNGL  ++     +I  +    S  E   +L
Subjt:  TARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHILNGLPIEFSAFRTLILTRDTTLSLAELEVLL

Query:  NAE
          E
Subjt:  NAE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAATGCCCAGGAGGAAAAGGAAATCGGTCTTGAAGTGAAGAAGAAGGTTGCATTCGAGCTCTGTGATGATCCATGGGGACTTGAAGATCAAGTGATGGAAAATCA
CATGCAAGCCACTACCGCTAGAGAACTTTGGCTAAGTCTTGAGAACCGATATTCCTCCAAAACTCGATCTAGTGTCTTAGAACTCAAATATGCTTTTTATACAGTCAAGA
AAAAACCCACAGAAAGTGTTGAACAATATTTTCGAAAAGTAAAAGTGCTAGTTGACTGCCTTGCTGCCGCCGGAGTCAAGATTGACAATGAGCAGAGTCTTCTGCATATT
CTTAATGGCCTACCGATCGAGTTTAGTGCATTTCGCACATTGATCCTCACGCGTGATACAACTCTTTCTCTTGCAGAACTTGAGGTTTTACTCAATGCTGAAACCAAGAT
TGTTGGTTTTCCTCAAATCAACGGTAGATCCAGCTCCAACGGCGATGGTCGTCTTCCAGTAGCTTGGTCGCAGCAGTTGTGGAGCTCCCAACAGAGGCAGCAGTCGTGGT
ATGAGCGAAAGAGGAAGGAATGGAAGAGGCTTCTTCCAAAACCATAA
mRNA sequenceShow/hide mRNA sequence
CGCAACTCACGATTTCCTCTCCATCGTGCGCGAGCCCAAGCACCAGCACTCCATCGATCTTCCAACTTCCATCAGACGGTGAGACATCGGTGGCGGCTCACCATCTTCGA
AGGTGGTGACTTCGACGTCCGGCTTCTTCTCCCTCACGACAGTAGCGCCAGGCGGTGGCTTCGATAGCAATGCCAGCGCTTCTCCGTCATGGTTCAACTCTTCTCCCTTT
GCCACTTCGACGACCGGCGACGTACAACTTCCGAGCTGCGACTTCGACGACCGGCGACGTACAACTTCCAAACTGCGACTTCGACGACCGGCAGCGACTAGAACTTCGAA
AGGTGTCTTCGACGGACGGAAGCTACTACTTGGAAGCGGCTAGGAGGGACGGTGGCTACGACTTCTGAACGGGAATCCACTGAGAATGTGTAATGCCCAGGAGGAAAAGG
AAATCGGTCTTGAAGTGAAGAAGAAGGTTGCATTCGAGCTCTGTGATGATCCATGGGGACTTGAAGATCAAGTGATGGAAAATCACATGCAAGCCACTACCGCTAGAGAA
CTTTGGCTAAGTCTTGAGAACCGATATTCCTCCAAAACTCGATCTAGTGTCTTAGAACTCAAATATGCTTTTTATACAGTCAAGAAAAAACCCACAGAAAGTGTTGAACA
ATATTTTCGAAAAGTAAAAGTGCTAGTTGACTGCCTTGCTGCCGCCGGAGTCAAGATTGACAATGAGCAGAGTCTTCTGCATATTCTTAATGGCCTACCGATCGAGTTTA
GTGCATTTCGCACATTGATCCTCACGCGTGATACAACTCTTTCTCTTGCAGAACTTGAGGTTTTACTCAATGCTGAAACCAAGATTGTTGGTTTTCCTCAAATCAACGGT
AGATCCAGCTCCAACGGCGATGGTCGTCTTCCAGTAGCTTGGTCGCAGCAGTTGTGGAGCTCCCAACAGAGGCAGCAGTCGTGGTATGAGCGAAAGAGGAAGGAATGGAA
GAGGCTTCTTCCAAAACCATAA
Protein sequenceShow/hide protein sequence
MCNAQEEKEIGLEVKKKVAFELCDDPWGLEDQVMENHMQATTARELWLSLENRYSSKTRSSVLELKYAFYTVKKKPTESVEQYFRKVKVLVDCLAAAGVKIDNEQSLLHI
LNGLPIEFSAFRTLILTRDTTLSLAELEVLLNAETKIVGFPQINGRSSSNGDGRLPVAWSQQLWSSQQRQQSWYERKRKEWKRLLPKP