; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G014960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G014960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr07:21833438..21833926
RNA-Seq ExpressionLsi07G014960
SyntenyLsi07G014960
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581122.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]2.5e-5972.78Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPPT T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCANTTT-----------PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP       P P  FL  HWF+QNH+ ANTTT            SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCANTTT-----------PSASSSPDALSPNTDAAVEHVTIDLTLRL

KAG7017856.1 Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-5974.29Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPP T T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCANTTT------PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP       P P  FL  HWF+QNH+ ANTTT       SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCANTTT------PSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_022934585.1 protein LATE FLOWERING-like [Cucurbita moschata]1.6e-5876.79Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPP  T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP---PTPGAFLDDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  AP+PTP   P P  FL  HWF+QNH+ ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP---PTPGAFLDDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_022983390.1 protein LATE FLOWERING-like [Cucurbita maxima]1.2e-5877.71Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   P   TMT    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-PTPGAFLDDHWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP P P  FL  HWF+QNH+ AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-PTPGAFLDDHWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

XP_023529006.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]1.6e-5873.56Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS++KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPPT      HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCAN-----TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y   PAPTP       P P  FL  HWF+QNH+ AN     TTT +AS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-------PTPGAFLDDHWFHQNHFCAN-----TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

TrEMBL top hitse value%identityAlignment
A0A0A0LDF1 C2H2-type domain-containing protein5.1e-4265.14Show/hide
Query:  MADPAIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER-AASRKA---FTSEILHLG--SLQHSPPPPTMT
        MADP IYDFLSQTTT  PSN+S+   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQNAHKRER AASRKA    T+EILHLG  SLQHSPPPP  T
Subjt:  MADPAIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER-AASRKA---FTSEILHLG--SLQHSPPPPTMT

Query:  PPPHHHHLLPRYAPAPAPTPPTPGAFLDDHW-FHQNHFCANTTTPSASSSPDALSP--NTDAAVEHVTIDLTLRL
           HHHH LP +   P PTPP   +FLD H  FH N+FC NT     S+SPD LSP  +TD A+EH+ IDLTLRL
Subjt:  PPPHHHHLLPRYAPAPAPTPPTPGAFLDDHW-FHQNHFCANTTTPSASSSPDALSP--NTDAAVEHVTIDLTLRL

A0A6J1EJQ6 protein LATE FLOWERING-like4.9e-5373.46Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHS PPP   PP  +HHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTPPTPGAFLDDHWFHQNHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
            +P+ T   P A  D+HWFHQN+    TTT +AS+SP+ LSPN DAAVEHVTIDLTLRL
Subjt:  RYAPAPAPTPPTPGAFLDDHWFHQNHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1F843 protein LATE FLOWERING-like7.8e-5976.79Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   PPPP  T    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP---PTPGAFLDDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  AP+PTP   P P  FL  HWF+QNH+ ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP---PTPGAFLDDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1J5R2 protein LATE FLOWERING-like6.0e-5977.71Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAF SEILHLGSL   P   TMT    HHHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTP-PTPGAFLDDHWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
         Y  APAPTP P P  FL  HWF+QNH+ AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Subjt:  RYAPAPAPTP-PTPGAFLDDHWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

A0A6J1JQI7 protein LATE FLOWERING-like4.4e-5473.62Show/hide
Query:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP
        MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK FTSEILHLGSLQHS PPP   PP  +HHL  
Subjt:  MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLP

Query:  RYAPAPAPTPPTPGAFLDDHWFHQ-NHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL
            +P+ T   P A  D+HWFHQ NH+   TTT SAS+SP+ LSPN DAAVEHVTIDLTLRL
Subjt:  RYAPAPAPTPPTPGAFLDDHWFHQ-NHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 27.1e-0957.69Show/hide
Query:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Subjt:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q39263 Zinc finger protein 41.1e-0953.97Show/hide
Query:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

Q42485 Zinc finger protein 14.2e-0955.77Show/hide
Query:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

Q9FFX4 Zinc finger protein KNUCKLES9.6e-1454.88Show/hide
Query:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP
        P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +SPP
Subjt:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP

Q9FKA9 Protein LATE FLOWERING7.6e-1145.16Show/hide
Query:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT
        SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P    +P  HH  +L   A A     PT
Subjt:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT

Arabidopsis top hitse value%identityAlignment
AT1G66140.1 zinc finger protein 47.8e-1153.97Show/hide
Query:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +++A
Subjt:  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA

AT1G80730.1 zinc-finger protein 13.0e-1055.77Show/hide
Query:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK
        S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Subjt:  SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein6.8e-1554.88Show/hide
Query:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP
        P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+       +LG L +SPP
Subjt:  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPP

AT5G48890.1 C2H2-like zinc finger protein5.4e-1245.16Show/hide
Query:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT
        SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++     H+ P    +P  HH  +L   A A     PT
Subjt:  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT

AT5G57520.1 zinc finger protein 25.1e-1057.69Show/hide
Query:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA
        +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Subjt:  NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTT
TCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCT
CCGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACTACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACAC
CGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTT
TCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAA
TTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCT
CCGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACTACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACAC
CGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA
Protein sequenceShow/hide protein sequence
MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP
PTPGAFLDDHWFHQNHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL