CuGenDBv2

Gene ID	Lsi08G000100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Origin recognition complex subunit 1
Genome location	chr08:233596..240778
RNA-Seq Expression	Lsi08G000100
Synteny	Lsi08G000100
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006325 - chromatin organization (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003682 - chromatin binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR020793 - Origin recognition complex, subunit 1 IPR041083 - AAA lid domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052480.1 origin of replication complex subunit 1B-like [Cucumis melo var. makuwa]

7.2e-19

87.5

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEI DYHLKKH    LSL  NTAKTHVGIAEVE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

XP_016899376.1 PREDICTED: origin of replication complex subunit 1B-like [Cucumis melo]

7.2e-19

87.5

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEI DYHLKKH    LSL  NTAKTHVGIAEVE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

XP_031738488.1 origin of replication complex subunit 1B [Cucumis sativus]

9.0e-22

90.62

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDYHLKKH +KQLSL  NTAKTHVGIAEVE AIQEMFQAPH+Q
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

XP_038890220.1 origin of replication complex subunit 1B-like isoform X1 [Benincasa hispida]

1.1e-19

85.07

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNT---AKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDYHLKKHL+K+ S T +T    KTHVGIAEVEAAIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNT---AKTHVGIAEVEAAIQEMFQAPHIQ

XP_038890237.1 origin of replication complex subunit 1B-like isoform X2 [Benincasa hispida]

1.1e-19

85.07

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNT---AKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDYHLKKHL+K+ S T +T    KTHVGIAEVEAAIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNT---AKTHVGIAEVEAAIQEMFQAPHIQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED3 Origin recognition complex subunit 1

4.4e-22

90.62

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDYHLKKH +KQLSL  NTAKTHVGIAEVE AIQEMFQAPH+Q
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

A0A1S4DTQ8 Origin recognition complex subunit 1

3.5e-19

87.5

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEI DYHLKKH    LSL  NTAKTHVGIAEVE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

A0A5D3CPN7 Origin recognition complex subunit 1

3.5e-19

87.5

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEI DYHLKKH    LSL  NTAKTHVGIAEVE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

A0A6J1ICM7 Origin recognition complex subunit 1

3.6e-16

79.69

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDY +KK L    S+    AKTHVGIAEVEAAI EMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

A0A6J1IG29 Origin recognition complex subunit 1

3.6e-16

79.69

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAEITDY +KK L    S+    AKTHVGIAEVEAAI EMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

SwissProt top hits

e value

%identity

Alignment

Q5SMU7 Origin of replication complex subunit 1

2.6e-11

59.38

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ
        VAA+SGDARRALEICRRAAE  DY +K    +    + N  K  V + ++EAAIQE+FQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQ

Q710E8 Origin of replication complex subunit 1A

1.4e-12

67.69

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAE+ DY LKK  I        +AK+ + I A+VE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ

Q9SU24 Origin of replication complex subunit 1B

2.0e-11

64.62

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAE+ D+ L          T  +AK  + I A+VEAAIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G12620.1 origin of replication complex 1B

1.4e-12

64.62

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAE+ D+ L          T  +AK  + I A+VEAAIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ

AT4G14700.1 origin recognition complex 1

9.7e-14

67.69

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Query:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ
        VAAISGDARRALEICRRAAE+ DY LKK  I        +AK+ + I A+VE AIQEMFQAPHIQ
Subjt:  VAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGI-AEVEAAIQEMFQAPHIQ

Sequences

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CDS sequence

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ATGACGAATGTAGCCGCTATTTCAGGAGATGCACGTCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCATCTTATAAAGCAGCT
GAGTTTGACTTTCAACACTGCGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGCTTCAATTGAATAA

mRNA sequence

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Protein sequence

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MTNVAAISGDARRALEICRRAAEITDYHLKKHLIKQLSLTFNTAKTHVGIAEVEAAIQEMFQAPHIQASIE

Lsi08G000100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome