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Lsi08G000190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G000190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHistone H2B
Genome locationchr08:503021..503907
RNA-Seq ExpressionLsi08G000190
SyntenyLsi08G000190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7027234.1 unnamed protein product [Microthlaspi erraticum]3.4e-0839.81Show/hide
Query:  FEMGRLWWRRMSRRRRRKRRRNINII-VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVG
        FE   L  R +    RR+RR  I  +  + + S+ +++FD+REK + V+ VSLD  F FR+R+R AGD D AE++P +    +++N D+D LV +   V 
Subjt:  FEMGRLWWRRMSRRRRRKRRRNINII-VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVG

Query:  DVE
        DVE
Subjt:  DVE

GER32639.1 hypothetical protein STAS_08719 [Striga asiatica]1.1e-0635.16Show/hide
Query:  SKPNIAFDMREKATFVKWVSLDISFLFRKRHRHA-GDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLH
        S  ++A D+RE A F++ V +D   +    H  A  D D  EK  A +G  +V+  ++  LVG    V D E ELLVP+R+E+   G  P  L +++D  
Subjt:  SKPNIAFDMREKATFVKWVSLDISFLFRKRHRHA-GDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLH

Query:  KGVGR-VAVFGHEVAGVEDFDDELGHGG
         G GR +AV GH+V G+ +   +    G
Subjt:  KGVGR-VAVFGHEVAGVEDFDDELGHGG

KAG6592392.1 hypothetical protein SDJN03_14738, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5267.68Show/hide
Query:  QGGFEMGRLWWRRMSRRRRRKRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFR
        +G FE+G LW           RRR I IIV+ IHSKPNIAFDMREK TF+KWVSLD+S LFR  HRHAGDSDTAEKI AVAGFP+VIN+DIDG VG++ R
Subjt:  QGGFEMGRLWWRRMSRRRRRKRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFR

Query:  VGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKER
        VGDVE E+L+P RIE+ V+G SPLFLV K+DL KGVGRVAV GH+VAGVED  +ELGH   K++
Subjt:  VGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKER

KAG7025207.1 hypothetical protein SDJN02_14030, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-5852.63Show/hide
Query:  RTAILLPMGGWSPPMRTLDFALECRRRWTCLSEVHPGCHWRWPLEFCRWWSHRRRSRSRSRSCPYGVEGLDVLFLLLYLRTLVSITGDLHFLLIEYVGID
        RTAILL MGGWSPPMRTLDFALE   R      V  GC             H       +           + +                          
Subjt:  RTAILLPMGGWSPPMRTLDFALECRRRWTCLSEVHPGCHWRWPLEFCRWWSHRRRSRSRSRSCPYGVEGLDVLFLLLYLRTLVSITGDLHFLLIEYVGID

Query:  FLQGGFEMGRLWWRRMSRRRRRKRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKI
          +G FEMG LW           RRR I IIV+ IHSKPNIAFDMREK TF+KWVSLD+S LFR  HRHAGDSDTAEKI AVAGFP+VIN+DIDG VG++
Subjt:  FLQGGFEMGRLWWRRMSRRRRRKRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKI

Query:  FRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKER
         RVGDVE E+L+P RIE+ V+G SPLFLV K+DL KGVGRVAV GH+VAGVED  +ELGH   K+R
Subjt:  FRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKER

PON63668.1 hypothetical protein PanWU01x14_130000, partial [Parasponia andersonii]3.9e-0429.6Show/hide
Query:  WRWPLEFCRWWSHRRR-----------SRSRSRSCPYGVEGLDVL---FLLLYLRTLVSITGDLHFLLIEYVGID--FLQGGFEMGRLWWRRMSRRRRRK
        WR+ L  CR    RRR           S S SR   + +  L +L    LLL + + +S+     FLL+  +  D  F    F +  L W  +  RRR  
Subjt:  WRWPLEFCRWWSHRRR-----------SRSRSRSCPYGVEGLDVL---FLLLYLRTLVSITGDLHFLLIEYVGID--FLQGGFEMGRLWWRRMSRRRRRK

Query:  RRRNINIIVNYIHSKPNIAFDMREKATFV-----KWVSLDISFLFRKRHRHAGDSD-TAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIE
          R++   V+ I+ + N+AFD+R+    +     K +SL I          AGD D   E  P    F +V+  D++GL G    V D E E LVP+ +E
Subjt:  RRRNINIIVNYIHSKPNIAFDMREKATFV-----KWVSLDISFLFRKRHRHAGDSD-TAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIE

Query:  VSVFGMSPLFLVIKIDLHKGVGR-VAVFGHEVAGVEDFDDELGHGGGKER
        V   G     L  +++   G GR + VF H++ GV    ++L     + R
Subjt:  VSVFGMSPLFLVIKIDLHKGVGR-VAVFGHEVAGVEDFDDELGHGGGKER

TrEMBL top hitse value%identityAlignment
A0A0A0KSX0 Uncharacterized protein1.2e-11585.94Show/hide
Query:  CRRRWTCLSEVHPGCHWRWPLEFCRWWSHRRRSRSRSRSCPYGVEGLDVLFLLLY-LRTLVSITGDLHFLLIEYVGIDFLQGGFEMGRLWWRRMSRRRRR
        CRRRWTCLSEVHPGCHW WPLEFCRWWSH  R RSRSRSC YGVEGLDVLFLLL  LRTLVSI+GDL FLLIEYVGIDFLQG FEMGRLWWR M RRRRR
Subjt:  CRRRWTCLSEVHPGCHWRWPLEFCRWWSHRRRSRSRSRSCPYGVEGLDVLFLLLY-LRTLVSITGDLHFLLIEYVGIDFLQGGFEMGRLWWRRMSRRRRR

Query:  KRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFG
        K RR   IIVN+IHSK NIAFDMREKATFVKWVSL+ISFLFRKRHRHAGDS+TAEKIPAVAGFPLVIN++IDGLVGKIFRVGDVEEELL+PVRIE+S+FG
Subjt:  KRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFG

Query:  MSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKERDWNWD
        MS LFLV+KI+L KG GRVAVFGHEVAGVEDF  ELGHGGGK+RD +WD
Subjt:  MSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKERDWNWD

A0A5A7PIP9 Uncharacterized protein5.3e-0735.16Show/hide
Query:  SKPNIAFDMREKATFVKWVSLDISFLFRKRHRHA-GDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLH
        S  ++A D+RE A F++ V +D   +    H  A  D D  EK  A +G  +V+  ++  LVG    V D E ELLVP+R+E+   G  P  L +++D  
Subjt:  SKPNIAFDMREKATFVKWVSLDISFLFRKRHRHA-GDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLVIKIDLH

Query:  KGVGR-VAVFGHEVAGVEDFDDELGHGG
         G GR +AV GH+V G+ +   +    G
Subjt:  KGVGR-VAVFGHEVAGVEDFDDELGHGG

A0A6D2IEE9 Uncharacterized protein1.7e-0839.81Show/hide
Query:  FEMGRLWWRRMSRRRRRKRRRNINII-VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVG
        FE   L  R +    RR+RR  I  +  + + S+ +++FD+REK + V+ VSLD  F FR+R+R AGD D AE++P +    +++N D+D LV +   V 
Subjt:  FEMGRLWWRRMSRRRRRKRRRNINII-VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVG

Query:  DVE
        DVE
Subjt:  DVE

A0A7C9DJ16 Uncharacterized protein2.6e-1438.19Show/hide
Query:  VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEK--IPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLV
        ++ IH + NIA DMRE+ + +K V L+        + H+ + DT +K  +  ++G  ++IN+D++GLV ++  VGD E ELL+P R++V   G+S L LV
Subjt:  VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEK--IPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLV

Query:  IKIDLHKGV-GRVAVFGHEVAGVEDFDDEL--GHGGGKERDWNW
        +K+ L+ G  G  AVF H+V  V  F  +L   H G +ER+  W
Subjt:  IKIDLHKGV-GRVAVFGHEVAGVEDFDDEL--GHGGGKERDWNW

A0A7C9DNP1 Uncharacterized protein1.6e-1438.19Show/hide
Query:  VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEK--IPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLV
        ++ IH + NIA DMRE+ + +K V L+        + H+ + DT +K  +  ++G  ++IN+D++GLV ++  VGD E ELL+P R++V   G+S L LV
Subjt:  VNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEK--IPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEVSVFGMSPLFLV

Query:  IKIDLHKGV-GRVAVFGHEVAGVEDFDDEL--GHGGGKERDWNW
        +K+ L+ G  G  AVF H+V  V  F  +L   H G +ER+  W
Subjt:  IKIDLHKGV-GRVAVFGHEVAGVEDFDDEL--GHGGGKERDWNW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGTACCGCAATCTTGCTGCCAATGGGGGGCTGGTCTCCACCAATGCGAACTCTGGATTTTGCTTTGGAATGTCGCCGGAGATGGACCTGCTTGAGCGAAGTCCA
TCCGGGTTGCCATTGGCGGTGGCCGCTTGAATTCTGTCGGTGGTGGAGCCACCGACGCCGCAGCCGCAGCCGCAGCCGGAGCTGTCCCTATGGAGTGGAAGGTCTTGACG
TCCTTTTCCTTCTTCTTTACCTTCGCACTCTCGTATCCATTACTGGGGACTTGCACTTCCTCCTGATCGAATATGTTGGGATTGATTTCTTGCAGGGGGGTTTCGAAATG
GGGAGGTTGTGGTGGCGCCGGATGAGTAGGAGGAGGAGAAGAAAAAGAAGACGAAACATCAACATCATCGTGAATTATATACATTCGAAACCCAATATCGCCTTTGATAT
GAGAGAAAAGGCCACGTTTGTCAAGTGGGTATCTCTGGATATTAGCTTCCTGTTCAGAAAGAGGCACCGACATGCCGGAGATTCTGACACGGCCGAGAAAATCCCGGCGG
TGGCCGGATTTCCTCTCGTTATAAACAACGACATCGATGGTCTTGTTGGGAAAATCTTTAGGGTGGGAGATGTTGAAGAGGAGCTTCTCGTTCCAGTAAGGATTGAGGTC
TCTGTGTTTGGTATGAGTCCTCTGTTTTTGGTCATCAAAATCGACCTCCACAAAGGGGTTGGCAGAGTCGCCGTCTTTGGGCATGAGGTCGCCGGCGTCGAGGATTTCGA
CGACGAGCTTGGTCATGGCGGAGGAAAGGAGAGGGATTGGAATTGGGATTGGGATCTGAATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGTACCGCAATCTTGCTGCCAATGGGGGGCTGGTCTCCACCAATGCGAACTCTGGATTTTGCTTTGGAATGTCGCCGGAGATGGACCTGCTTGAGCGAAGTCCA
TCCGGGTTGCCATTGGCGGTGGCCGCTTGAATTCTGTCGGTGGTGGAGCCACCGACGCCGCAGCCGCAGCCGCAGCCGGAGCTGTCCCTATGGAGTGGAAGGTCTTGACG
TCCTTTTCCTTCTTCTTTACCTTCGCACTCTCGTATCCATTACTGGGGACTTGCACTTCCTCCTGATCGAATATGTTGGGATTGATTTCTTGCAGGGGGGTTTCGAAATG
GGGAGGTTGTGGTGGCGCCGGATGAGTAGGAGGAGGAGAAGAAAAAGAAGACGAAACATCAACATCATCGTGAATTATATACATTCGAAACCCAATATCGCCTTTGATAT
GAGAGAAAAGGCCACGTTTGTCAAGTGGGTATCTCTGGATATTAGCTTCCTGTTCAGAAAGAGGCACCGACATGCCGGAGATTCTGACACGGCCGAGAAAATCCCGGCGG
TGGCCGGATTTCCTCTCGTTATAAACAACGACATCGATGGTCTTGTTGGGAAAATCTTTAGGGTGGGAGATGTTGAAGAGGAGCTTCTCGTTCCAGTAAGGATTGAGGTC
TCTGTGTTTGGTATGAGTCCTCTGTTTTTGGTCATCAAAATCGACCTCCACAAAGGGGTTGGCAGAGTCGCCGTCTTTGGGCATGAGGTCGCCGGCGTCGAGGATTTCGA
CGACGAGCTTGGTCATGGCGGAGGAAAGGAGAGGGATTGGAATTGGGATTGGGATCTGAATCTGTAA
Protein sequenceShow/hide protein sequence
MSRTAILLPMGGWSPPMRTLDFALECRRRWTCLSEVHPGCHWRWPLEFCRWWSHRRRSRSRSRSCPYGVEGLDVLFLLLYLRTLVSITGDLHFLLIEYVGIDFLQGGFEM
GRLWWRRMSRRRRRKRRRNINIIVNYIHSKPNIAFDMREKATFVKWVSLDISFLFRKRHRHAGDSDTAEKIPAVAGFPLVINNDIDGLVGKIFRVGDVEEELLVPVRIEV
SVFGMSPLFLVIKIDLHKGVGRVAVFGHEVAGVEDFDDELGHGGGKERDWNWDWDLNL