CuGenDBv2

Gene ID	Lsi08G000270
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
Genome location	chr08:677714..685760
RNA-Seq Expression	Lsi08G000270
Synteny	Lsi08G000270
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573930.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-21

59.43

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YL MLPME                 PILTIVA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

KAG7012994.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-21

59.43

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YL MLPME                 PILTIVA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

XP_022944845.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like [Cucurbita moschata]

2.4e-21

59.43

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YL MLPME                 PILTIVA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

XP_023531674.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]

3.2e-21

58.49

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PIL+IVA  +VRDP L P +KKD  E  KSQFS++HSD L IIR YE  KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

XP_038892223.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]

3.8e-22

60.38

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PILT+VA L+VRDP L P +KKDV E  KSQFSQ+HSD L IIR Y   KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZF7 DExH-box ATP-dependent RNA helicase DExH5

1.5e-21

57.55

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PILT+VA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+N+G YD  WKN LS++S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

A0A5D3CFK3 DExH-box ATP-dependent RNA helicase DExH5

1.5e-21

57.55

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PILT+VA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+N+G YD  WKN LS++S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

A0A6J1FZ75 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like

1.2e-21

59.43

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YL MLPME                 PILTIVA L+VRDP L P +KKD  E  KSQFSQ+HSD L IIR Y   KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

A0A6J1JD40 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1

1.5e-21

58.49

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PIL+IVA  +VRDP L P +KKD  E  KSQFS++HSD L IIR YE  KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

A0A6J1JHV1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2

1.5e-21

58.49

Show/hide

Query:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI
        YLTMLPME                 PIL+IVA  +VRDP L P +KKD  E  KSQFS++HSD L IIR YE  KE E+NFG YD  WKN LSV+S+KAI
Subjt:  YLTMLPME-----------------PILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAI

Query:  DSLRKE
        DSLRKE
Subjt:  DSLRKE

SwissProt top hits

e value

%identity

Alignment

F4HYJ7 DExH-box ATP-dependent RNA helicase DExH3

5.5e-16

41.18

Show/hide

Query:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV
        GKN    P   K    L +      ++P++T+VA L+VRDP L PF KKD+ ET +S+FS +++SD L ++R Y   K+ E+    YD  WKN LS +++
Subjt:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV

Query:  KAIDSLRKE--NSVKKISI
        KA+DS+RK+  N +K+ S+
Subjt:  KAIDSLRKE--NSVKKISI

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial

5.3e-19

55.42

Show/hide

Query:  MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE
        ++PILT+ A L+VRDP L P  KKD+ E  KSQFS++HSD L ++R YE  K+ E+    YD  WKN LS++S++AIDSLRKE
Subjt:  MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE

Arabidopsis top hits

e value

%identity

Alignment

AT1G48650.1 DEA(D/H)-box RNA helicase family protein

3.9e-17

41.18

Show/hide

Query:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV
        GKN    P   K    L +      ++P++T+VA L+VRDP L PF KKD+ ET +S+FS +++SD L ++R Y   K+ E+    YD  WKN LS +++
Subjt:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV

Query:  KAIDSLRKE--NSVKKISI
        KA+DS+RK+  N +K+ S+
Subjt:  KAIDSLRKE--NSVKKISI

AT1G48650.2 DEA(D/H)-box RNA helicase family protein

3.9e-17

41.18

Show/hide

Query:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV
        GKN    P   K    L +      ++P++T+VA L+VRDP L PF KKD+ ET +S+FS +++SD L ++R Y   K+ E+    YD  WKN LS +++
Subjt:  GKNSKHTPKRSKASCYLTMLP----MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESV

Query:  KAIDSLRKE--NSVKKISI
        KA+DS+RK+  N +K+ S+
Subjt:  KAIDSLRKE--NSVKKISI

AT2G01130.1 DEA(D/H)-box RNA helicase family protein

3.7e-20

55.42

Show/hide

Query:  MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE
        ++PILT+ A L+VRDP L P  KKD+ E  KSQFS++HSD L ++R YE  K+ E+    YD  WKN LS++S++AIDSLRKE
Subjt:  MEPILTIVARLNVRDPSLRPFKKKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE

AT5G04895.1 DEA(D/H)-box RNA helicase family protein

7.6e-13

43.37

Show/hide

Query:  EPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE
        +PILTIV+ L+VRDP L P  KKD+  + K +FS +++SD + ++R +E  K+ E+    Y+  W+N LS ++++AI SLRK+
Subjt:  EPILTIVARLNVRDPSLRPFKKKDVIETTKSQFS-QNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCATATCTCAGAGATGACATGGAAGAGGTCAACAAGCTCAAGTACCAAAATAAGAGTGGAAGAAAGTGGCAATGAACTATTCCCCAGAGATGAGTTAAAAGAGGAAAA
GAACAAAAAGGAAGTTGTCAGATTTTTAAAAAGTAAAGTTCTTTCCCCAATTCTTCAACAACCTACTGGAAAAATAAAGAAAGAAAAAGGAGGAAAGAATAGCAAACACA
CTCCCAAGAGAAGTAAAGCAAGTTGTTATTTGACTATGCTCCCAATGGAACCAATTTTGACCATTGTTGCTCGCCTCAATGTGAGAGACCCTTCTCTAAGGCCATTTAAG
AAGAAGGATGTTATAGAGACTACAAAATCTCAATTTTCACAAAATCATAGTGATCGCCTTGTTATTATTCGGGTCTATGAGAGACGGAAAGAAGTTGAGAAGAACTTTGG
TGAATATGACATCTATTGGAAGAACATTCTTTCTGTAGAATCAGTGAAGGCTATTGATTCACTAAGGAAAGAAAATTCTGTAAAGAAAATCTCAATAAAAAGACAACAAT
TCATACAAAAGAACAGCAATCTCCAAAGGACAGTCAATAATTTGAGGGCTAGGATGATGAGATGGAATTGGTCTGAAGTTATGACAAAGGAGATTTCACAGCAGATATTA
TGTATTCCATGGCCTGTAATACTAAAGCCTAAGAGCCAGATACCAGCAAATAAAAGCAGGAAATTGAAACCCAACAAACGGAAAATGCATTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MHISEMTWKRSTSSSTKIRVEESGNELFPRDELKEEKNKKEVVRFLKSKVLSPILQQPTGKIKKEKGGKNSKHTPKRSKASCYLTMLPMEPILTIVARLNVRDPSLRPFK
KKDVIETTKSQFSQNHSDRLVIIRVYERRKEVEKNFGEYDIYWKNILSVESVKAIDSLRKENSVKKISIKRQQFIQKNSNLQRTVNNLRARMMRWNWSEVMTKEISQQIL
CIPWPVILKPKSQIPANKSRKLKPNKRKMH

Lsi08G000270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome