; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G000330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G000330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationchr08:846988..849407
RNA-Seq ExpressionLsi08G000330
SyntenyLsi08G000330
Gene Ontology termsNA
InterPro domainsIPR008686 - RNA-dependent RNA polymerase, mitoviral


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAB41759.1 TPA_inf: RNA-dependent RNA polymerase [Beta vulgaris mitovirus 1]2.8e-2934.13Show/hide
Query:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR
        +GV+I   KS++SDTG  EFAK+F V G R D   +S + L  Y HPY                    GG GY+ L++LS+     R+  R  AM+ K  
Subjt:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR

Query:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR
        G             N     L +E +R                      +F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+
Subjt:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR

Query:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV
         + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V
Subjt:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV

DAC76749.1 TPA_inf: RNA-dependent RNA polymerase [Beta vulgaris mitovirus 1]2.8e-2934.13Show/hide
Query:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR
        +GV+I   KS++SDTG  EFAK+F V G R D   +S + L  Y HPY                    GG GY+ L++LS+     R+  R  AM+ K  
Subjt:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR

Query:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR
        G             N     L +E +R                      +F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+
Subjt:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR

Query:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV
         + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V
Subjt:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV

KAB1199680.1 hypothetical protein CJ030_MR0G017069 [Morella rubra]2.0e-3590.12Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEK WRIRRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP

KAB8477474.1 hypothetical protein FH972_025340 [Carpinus fangiana]1.9e-3343.55Show/hide
Query:  GGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLRY
        GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL Y
Subjt:  GGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLRY

Query:  VHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVE
         H Y+  A  PD+ ++  F  +V  + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+
Subjt:  VHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVE

KAF3452148.1 hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis]1.7e-7184.28Show/hide
Query:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIR
        RVLAKLSHTRSRHFERVLAMYTKPRGHND  LELWL RV             FLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEKEWRIR
Subjt:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVR-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIR

Query:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDDET
        RESSELIRF LLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLL GVSG+DFLVEPD  T
Subjt:  RESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDDET

TrEMBL top hitse value%identityAlignment
A0A2L2P752 RNA-dependent RNA polymerase2.3e-2934.13Show/hide
Query:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR
        +GV+I   KS++SDTG  EFAK+F V G R D   +S + L  Y HPY                    GG GY+ L++LS+     R+  R  AM+ K  
Subjt:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR

Query:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR
        G             N     L +E +R                      +F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  V    W +R+
Subjt:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR

Query:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV
         + EL+RFG+LWK YD V   G+ W P  L E      GW+L G SG DF+V
Subjt:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV

A0A2Z6JSN1 RNA-dependent RNA polymerase1.3e-2934.13Show/hide
Query:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR
        +GV+I   KS++SDTG  EFAK+F V G R D   +S + L  Y HPY                    GG GY+ L++LS+     R+  R  AM+ K  
Subjt:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR

Query:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR
        G             N     L +E +R                      +F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+
Subjt:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR

Query:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV
         + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V
Subjt:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV

A0A482F2N2 RNA-dependent RNA polymerase1.3e-2934.13Show/hide
Query:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR
        +GV+I   KS++SDTG  EFAK+F V G R D   +S + L  Y HPY                    GG GY+ L++LS+     R+  R  AM+ K  
Subjt:  IGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCLLAYHHPY--------------------GGGGYRVLAKLSHTRS--RHFERVLAMYTKPR

Query:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR
        G             N     L +E +R                      +F E +L+ NW+K WL+Y+ WY +VA SPD+++   F +  +    W +R+
Subjt:  G------------HNDETLELWLERVR----------------------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-SASVYEKEWRIRR

Query:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV
         + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V
Subjt:  ESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLV

A0A5N6L0Z4 Uncharacterized protein9.0e-3443.55Show/hide
Query:  GGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLRY
        GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL Y
Subjt:  GGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWL-------------------------------------ERVRDFLEWSLLRNWMKDWLRY

Query:  VHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVE
         H Y+  A  PD+ ++  F  +V  + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+
Subjt:  VHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVE

A0A6A1UKL6 Uncharacterized protein9.6e-3690.12Show/hide
Query:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP
        ERVRDFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D FSASVYEK WRIRRESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCAGTTGAGTGTTCATTCGATCCACCACCCGAGGCCAGGCCGATCAAATCGAGACGTTTTTGGGTTCGATCCAGCAAATATTCCAGATGTAGAGACAGATCCAAA
GCCATTTGATCGAGATCGAGTAGCTATAGCAGATCCATTTAGAGATCGGAACCCCGTTCCGGGTACACCCATTTTAGTAGCAACTGCCCCTAAGCCGATAGGAGTTCAAA
TTGAAACTCACAAATCTCTTCTTTCTGACACTGGTGCATTTGAGTTTGCTAAGCGCTTTTGCGTCAAGGGTGGACGCATGGATTTTTATACCATGTCTGCTCGTTGTTTG
CTTGCTTACCATCATCCATATGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCG
GGGTCACAATGACGAGACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGT
ACTGGAATGTCGCGAATTCACCGGATCTTTCCTTAAATGACGGATTTTCAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTT
GGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGT
CTCCGGCATTGATTTCTTAGTCGAGCCTGATGACGAAACTAACAACTGCCATAATGAACCTAAACTAAAGACGGAAAGAGTCACTCACGGAATACCTTTAGATTTCTTAA
AGAAGACTGATAAGGAAGGGAAACTAAGGCGGCCTAAGCCACTAGTACGAAGGAGCAAGCGGAGGCCCCCGTTCGAGACACTAACCATGGTGAGACCTGGAATAACAGAT
GCCGGAATGCTTTGGGAGGAAGGGCACAAGTCTTTCAAAAATCTCCAAAATCATGTGTTATCTGACGATAAAGCAAAATCAGATGAGAATTGGAAACGAGCTATGTTATA
CTTAAATTACAAACAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGCAGTTGAGTGTTCATTCGATCCACCACCCGAGGCCAGGCCGATCAAATCGAGACGTTTTTGGGTTCGATCCAGCAAATATTCCAGATGTAGAGACAGATCCAAA
GCCATTTGATCGAGATCGAGTAGCTATAGCAGATCCATTTAGAGATCGGAACCCCGTTCCGGGTACACCCATTTTAGTAGCAACTGCCCCTAAGCCGATAGGAGTTCAAA
TTGAAACTCACAAATCTCTTCTTTCTGACACTGGTGCATTTGAGTTTGCTAAGCGCTTTTGCGTCAAGGGTGGACGCATGGATTTTTATACCATGTCTGCTCGTTGTTTG
CTTGCTTACCATCATCCATATGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCG
GGGTCACAATGACGAGACATTAGAATTGTGGCTTGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGT
ACTGGAATGTCGCGAATTCACCGGATCTTTCCTTAAATGACGGATTTTCAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTT
GGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGT
CTCCGGCATTGATTTCTTAGTCGAGCCTGATGACGAAACTAACAACTGCCATAATGAACCTAAACTAAAGACGGAAAGAGTCACTCACGGAATACCTTTAGATTTCTTAA
AGAAGACTGATAAGGAAGGGAAACTAAGGCGGCCTAAGCCACTAGTACGAAGGAGCAAGCGGAGGCCCCCGTTCGAGACACTAACCATGGTGAGACCTGGAATAACAGAT
GCCGGAATGCTTTGGGAGGAAGGGCACAAGTCTTTCAAAAATCTCCAAAATCATGTGTTATCTGACGATAAAGCAAAATCAGATGAGAATTGGAAACGAGCTATGTTATA
CTTAAATTACAAACAAGAATAAGGATGCTCTTCAAAAGAATGAGACCTGGGATCTTGTCTTTCCACCATCTGACAAAAACATTGTTGGGTCAAGGTGGGCTTACAAGATC
AAATACAAGTAAGATGGTTTTTTATATAGAGGTACAAACTGTAGCAAATTTTCTCACGAGTAAGAACGCCTGCTTGCTCAAGGCTATGAAAAAGAGTAAGGTCTTTATTA
TGCCGAGACGTCACCTTCAGTCCAGTTGCTCTAAATGGTACCATTCGCACCCGCTTACATTCAGCACGGACCCAACTTTCATCCCAGTTAGACGTCAATCAAGCTTTCCT
TCACGGAGATCTCAAAGAAGAGGTCGAGGCCAACCCCCGGTTATGAAGACTCTATTCATCCAGACTATTTGTGTAAGCTTTCAAAGGCTCTCTATGGACTCAACTCAAAG
AGGCTTTGAAAAATTCAGCACAGCACTACTAG
Protein sequenceShow/hide protein sequence
MTQLSVHSIHHPRPGRSNRDVFGFDPANIPDVETDPKPFDRDRVAIADPFRDRNPVPGTPILVATAPKPIGVQIETHKSLLSDTGAFEFAKRFCVKGGRMDFYTMSARCL
LAYHHPYGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLERVRDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFSASVYEKEWRIRRESSELIRF
GLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDDETNNCHNEPKLKTERVTHGIPLDFLKKTDKEGKLRRPKPLVRRSKRRPPFETLTMVRPGITD
AGMLWEEGHKSFKNLQNHVLSDDKAKSDENWKRAMLYLNYKQE