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Lsi08G000420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G000420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF144A-like
Genome locationchr08:1044767..1045117
RNA-Seq ExpressionLsi08G000420
SyntenyLsi08G000420
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017907 - Zinc finger, RING-type, conserved site
IPR018957 - Zinc finger, C3HC4 RING-type
IPR031127 - E3 ubiquitin ligase RBR family
IPR044066 - TRIAD supradomain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039247.1 putative E3 ubiquitin-protein ligase RNF217 isoform X2 [Cucumis melo var. makuwa]1.9e-4070.64Show/hide
Query:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCPFVD
        ++   TTCNICTDDKA ++MFT++ECSH FCKDCIS+H AAK+EDNIAN+KCP+  C+ +L P+ICHSF+PKNL DRWGDVLCEA ILG  RL YCPF+D
Subjt:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCPFVD

Query:  CSVTLINDG
        CSV LI+DG
Subjt:  CSVTLINDG
KAE8649011.1 hypothetical protein Csa_009107 [Cucumis sativus]4.0e-4370.94Show/hide
Query:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP
        MA+++  TT CNICTDDKA V+MFT++ECSH FCKDCISNH AAK+EDNIAN+KCP+PGCE VL P++CHSF+PKN+LDRWG VLCEA ILG  RL YCP
Subjt:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP

Query:  FVDCSVTLINDGGRVSE
        F+DCSV LI+DG   ++
Subjt:  FVDCSVTLINDGGRVSE
XP_004141646.1 probable E3 ubiquitin-protein ligase ARI3 [Cucumis sativus]4.0e-4370.94Show/hide
Query:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP
        MA+++  TT CNICTDDKA V+MFT++ECSH FCKDCISNH AAK+EDNIAN+KCP+PGCE VL P++CHSF+PKN+LDRWG VLCEA ILG  RL YCP
Subjt:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP

Query:  FVDCSVTLINDGGRVSE
        F+DCSV LI+DG   ++
Subjt:  FVDCSVTLINDGGRVSE
XP_022152679.1 E3 ubiquitin-protein ligase RNF144A-like [Momordica charantia]2.0e-3459.29Show/hide
Query:  ANNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVD
        ++ +  + C ICTD K+  +MFTS+ CSH FC DCIS H AAK+EDNIA +KCPEP CE+ L+P +C SF+P+ +L+RWGD LCEA ILGI R+YCPFVD
Subjt:  ANNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVD

Query:  CSVTLINDGGRVS
        CS  +I+DGG  +
Subjt:  CSVTLINDGGRVS
XP_030968567.1 E3 ubiquitin-protein ligase RNF144A-like [Quercus lobata]2.5e-2950Show/hide
Query:  NKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVT
        ++T C IC D K   +MFT+N C+H FC  CIS + A K++DNI+++KCP+P C  +L+P  C   +P+ + DRWGD LCE+ ILG Q+ YCP+ DCS  
Subjt:  NKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVT

Query:  LINDGGRV
        L++DGG V
Subjt:  LINDGGRV
TrEMBL top hitse value%identityAlignment
A0A0A0KSV5 Uncharacterized protein1.9e-4370.94Show/hide
Query:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP
        MA+++  TT CNICTDDKA V+MFT++ECSH FCKDCISNH AAK+EDNIAN+KCP+PGCE VL P++CHSF+PKN+LDRWG VLCEA ILG  RL YCP
Subjt:  MANNNNKTT-CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCP

Query:  FVDCSVTLINDGGRVSE
        F+DCSV LI+DG   ++
Subjt:  FVDCSVTLINDGGRVSE
A0A3S3NGW9 Zinc finger, RING-type1.2e-2948.6Show/hide
Query:  NNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSV
        +++ TC+IC ++K   +MF +N+C H FC DCIS H AAK+++NI  ++CP+ GC  VL+P IC   LPK++ +RW + +CE+ +LG +R+YCPF DCS 
Subjt:  NNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSV

Query:  TLINDGG
         L++DGG
Subjt:  TLINDGG
A0A5A7TCD1 Putative E3 ubiquitin-protein ligase RNF217 isoform X29.0e-4170.64Show/hide
Query:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCPFVD
        ++   TTCNICTDDKA ++MFT++ECSH FCKDCIS+H AAK+EDNIAN+KCP+  C+ +L P+ICHSF+PKNL DRWGDVLCEA ILG  RL YCPF+D
Subjt:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YCPFVD

Query:  CSVTLINDG
        CSV LI+DG
Subjt:  CSVTLINDG
A0A6J1DGR7 E3 ubiquitin-protein ligase RNF144A-like9.6e-3559.29Show/hide
Query:  ANNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVD
        ++ +  + C ICTD K+  +MFTS+ CSH FC DCIS H AAK+EDNIA +KCPEP CE+ L+P +C SF+P+ +L+RWGD LCEA ILGI R+YCPFVD
Subjt:  ANNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVD

Query:  CSVTLINDGGRVS
        CS  +I+DGG  +
Subjt:  CSVTLINDGGRVS
A0A7N2LM99 Uncharacterized protein1.2e-2950Show/hide
Query:  NKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVT
        ++T C IC D K   +MFT+N C+H FC  CIS + A K++DNI+++KCP+P C  +L+P  C   +P+ + DRWGD LCE+ ILG Q+ YCP+ DCS  
Subjt:  NKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVT

Query:  LINDGGRV
        L++DGG V
Subjt:  LINDGGRV
SwissProt top hitse value%identityAlignment
Q9LVX0 Probable E3 ubiquitin-protein ligase ARI33.1e-0626.79Show/hide
Query:  CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKV-EDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YC---PFVDCSV
        C++C +D    ++ T  EC H FC DC   H   K+ E     I C    C+ + D ++    +   L DR+   L E+ +     + +C   P    ++
Subjt:  CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKV-EDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRL-YC---PFVDCSV

Query:  TLINDGGRVSEL
          I DG  V E+
Subjt:  TLINDGGRVSEL
Arabidopsis top hitse value%identityAlignment
AT2G25370.1 RING/U-box superfamily protein4.0e-0927.88Show/hide
Query:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDC
        N     TC I  ++     MF + +C H  C  C+  H   K+        C E GC+  L    C   L   L++ W   + E +I   +R+YCP+ +C
Subjt:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDC

Query:  SVTL
        S+ +
Subjt:  SVTL
AT2G25370.2 RING/U-box superfamily protein4.0e-0927.88Show/hide
Query:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDC
        N     TC I  ++     MF + +C H  C  C+  H   K+        C E GC+  L    C   L   L++ W   + E +I   +R+YCP+ +C
Subjt:  NNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDC

Query:  SVTL
        S+ +
Subjt:  SVTL
AT3G14250.1 RING/U-box superfamily protein1.9e-2237.14Show/hide
Query:  NKTTCNICTDDKAFVDMFT-SNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSV
        ++  C IC D+K   D+F  +  C+H +C DC   + A K+++N + IKCP+  C  +++P  C   +PK++ DRW  +LCE+ I    + YCPF DCS 
Subjt:  NKTTCNICTDDKAFVDMFT-SNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSV

Query:  TLIND
         ++N+
Subjt:  TLIND
AT3G53690.1 RING/U-box superfamily protein1.7e-2845.19Show/hide
Query:  CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVTLIND
        C IC D K+ ++ F    CSHF+C DC+S + AAK++DNI +I+CP  GC   L+P+ C   LPK + DRWGD LCEA ++  ++ YCP+ DCS  +  +
Subjt:  CNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVTLIND

Query:  GGRV
           V
Subjt:  GGRV
AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein3.0e-1235Show/hide
Query:  KTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVTL
        K  C IC +D     MF+ ++C H FC  C+  H   K+   +A  KCP  GC++ L  + C   L   L   W   L E AI   +R+YCP+  CS  +
Subjt:  KTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVTL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATAATAACAATAAAACTACTTGTAATATCTGTACGGACGACAAAGCCTTTGTAGACATGTTCACAAGCAACGAGTGCTCCCATTTCTTCTGCAAAGATTGCAT
CTCTAATCACACAGCGGCCAAAGTGGAAGACAATATAGCCAACATCAAGTGTCCAGAGCCAGGTTGTGAGACAGTGCTAGACCCCAACATCTGCCATTCATTCCTCCCCA
AAAACCTGTTGGATCGCTGGGGAGATGTGTTATGTGAGGCCGCCATTCTCGGCATCCAGAGACTCTACTGCCCCTTCGTGGACTGCTCGGTGACGCTTATCAATGATGGA
GGCCGAGTGTCTGAGCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATAATAACAATAAAACTACTTGTAATATCTGTACGGACGACAAAGCCTTTGTAGACATGTTCACAAGCAACGAGTGCTCCCATTTCTTCTGCAAAGATTGCAT
CTCTAATCACACAGCGGCCAAAGTGGAAGACAATATAGCCAACATCAAGTGTCCAGAGCCAGGTTGTGAGACAGTGCTAGACCCCAACATCTGCCATTCATTCCTCCCCA
AAAACCTGTTGGATCGCTGGGGAGATGTGTTATGTGAGGCCGCCATTCTCGGCATCCAGAGACTCTACTGCCCCTTCGTGGACTGCTCGGTGACGCTTATCAATGATGGA
GGCCGAGTGTCTGAGCTGTAA
Protein sequenceShow/hide protein sequence
MANNNNKTTCNICTDDKAFVDMFTSNECSHFFCKDCISNHTAAKVEDNIANIKCPEPGCETVLDPNICHSFLPKNLLDRWGDVLCEAAILGIQRLYCPFVDCSVTLINDG
GRVSEL