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Lsi08G000440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G000440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Genome locationchr08:1074878..1075114
RNA-Seq ExpressionLsi08G000440
SyntenyLsi08G000440
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033219.1 Pol polyprotein [Cucumis melo var. makuwa]3.8e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR R F+EG+LVL+RILPFQKDHRGKWTPNYEGPY+V++AFSGGALILTNMDGD LPNP+++++V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]1.1e-2878.21Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKV  R FREGDLVL+RILPFQKDHRGKWTPNYEGP+VV+KAFSGGAL+LTNMDG  L NPVNS++VR+Y+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

KAA0054571.1 Pol polyprotein [Cucumis melo var. makuwa]4.9e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR   F+EGDLVL+RILPFQKDH+GKWTPNYEGPY+V+ AFSGGALILTNMDGD LPNP+++N+V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

TYK20386.1 Pol polyprotein [Cucumis melo var. makuwa]4.9e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR   F+EGDLVL+RILPFQKDH+GKWTPNYEGPY+V+ AFSGGALILTNMDGD LPNP+++N+V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]1.1e-2876.92Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        M +AYDKKV SR FREGDLVL+RILP QKDHRGKWTPNYEGP+V++KAFSGGAL+L NMDG    NP+NS+HVRKY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

TrEMBL top hitse value%identityAlignment
A0A5A7SVL0 Pol polyprotein1.8e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR R F+EG+LVL+RILPFQKDHRGKWTPNYEGPY+V++AFSGGALILTNMDGD LPNP+++++V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

A0A5A7T7R4 Ribonuclease H5.3e-2978.21Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKV  R FREGDLVL+RILPFQKDHRGKWTPNYEGP+VV+KAFSGGAL+LTNMDG  L NPVNS++VR+Y+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

A0A5A7UM09 Pol polyprotein2.4e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR   F+EGDLVL+RILPFQKDH+GKWTPNYEGPY+V+ AFSGGALILTNMDGD LPNP+++N+V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

A0A5D3D9Y9 Pol polyprotein2.4e-2975.64Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        + RAY+KKVR   F+EGDLVL+RILPFQKDH+GKWTPNYEGPY+V+ AFSGGALILTNMDGD LPNP+++N+V+KY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

A0A6J1D7C7 Ribonuclease H5.3e-2976.92Show/hide
Query:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA
        M +AYDKKV SR FREGDLVL+RILP QKDHRGKWTPNYEGP+V++KAFSGGAL+L NMDG    NP+NS+HVRKY+A
Subjt:  MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGAGCTTATGACAAGAAGGTACGCTCCAGAGTTTTCAGAGAAGGAGATCTGGTTTTAAGGCGAATTCTCCCATTTCAGAAAGATCATCGAGGGAAATGGACTCC
AAATTATGAAGGACCCTACGTAGTAGAAAAAGCTTTTTCTGGAGGAGCTTTAATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGAATCATGTGC
GAAAGTACCATGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGAGCTTATGACAAGAAGGTACGCTCCAGAGTTTTCAGAGAAGGAGATCTGGTTTTAAGGCGAATTCTCCCATTTCAGAAAGATCATCGAGGGAAATGGACTCC
AAATTATGAAGGACCCTACGTAGTAGAAAAAGCTTTTTCTGGAGGAGCTTTAATCTTGACCAATATGGATGGGGACCGACTGCCTAATCCAGTAAACTCGAATCATGTGC
GAAAGTACCATGCGTAA
Protein sequenceShow/hide protein sequence
MTRAYDKKVRSRVFREGDLVLRRILPFQKDHRGKWTPNYEGPYVVEKAFSGGALILTNMDGDRLPNPVNSNHVRKYHA