CuGenDBv2

Gene ID	Lsi08G000660
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 17
Genome location	chr08:1418234..1424264
RNA-Seq Expression	Lsi08G000660
Synteny	Lsi08G000660
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019313 - Mediator complex, subunit Med17

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039269.1 mediator of RNA polymerase II transcription subunit 17 [Cucumis melo var. makuwa]

2.8e-149

73.33

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDNANLPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

XP_008459609.1 PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo]

2.8e-149

73.33

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDNANLPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

XP_011656092.1 mediator of RNA polymerase II transcription subunit 17 [Cucumis sativus]

3.8e-146

72.1

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN+E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQS QTVEGAN+ IL+NA+LPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVP SILHPNSI+ARTSD +QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEAL WGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLGHLSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

XP_022987637.1 mediator of RNA polymerase II transcription subunit 17-like [Cucurbita maxima]

4.3e-142

70.12

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFD VNRE FNPSLGINVTGIRENYLQLSIDQGTSVFISLV +GQSCQTVE ANTGILDN NLPFDSLD IELPDRSDPLEKKLRNPN+ TF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 D+PIS LSRQSGQ SNDGSGLL    +                                  A      +VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVP+S LHP SIQARTSDSH+MN+VTK+QF TKVVVNDDCITIEGEGAP+VVGLF GNSKD+YSMN+YGCDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIK +RDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRK NF+ SDVVPEYRKFLGHLSLEVL STLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
         GG L
Subjt:  VGGRL

XP_038889914.1 mediator of RNA polymerase II transcription subunit 17 [Benincasa hispida]

3.1e-148

72.59

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVNRE FNPSLGINVTGIRENYLQLSIDQGTSV ISLV SGQSCQTVEGANTGILDNANLPFDSLD IELPDRSDP EKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRP S LSRQSGQ +NDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQA TSD+HQMNN+TK+QFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDI+SMN+YGCDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGE  RLVA       +       VMDD LMED+KL+FDSSDV+PEYRKFLGHLSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VG  L
Subjt:  VGGRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXX2 Mediator of RNA polymerase II transcription subunit 17

1.8e-146

72.1

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN+E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQS QTVEGAN+ IL+NA+LPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVP SILHPNSI+ARTSD +QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEAL WGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLGHLSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

A0A1S4E2I2 Mediator of RNA polymerase II transcription subunit 17

1.3e-149

73.33

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDNANLPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

A0A5A7TDC1 Mediator of RNA polymerase II transcription subunit 17

1.3e-149

73.33

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDNANLPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

A0A5D3BMZ9 Mediator of RNA polymerase II transcription subunit 17

1.3e-149

73.33

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDNANLPFDSLD IELPDRSDPLEKKLRNPNHITF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 DRPIS LSRQSGQ SNDGSGLL    +                                  A       VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIKANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPEYRKFLG+LSLEVLHSTLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
        VGG L
Subjt:  VGGRL

A0A6J1JAW7 Mediator of RNA polymerase II transcription subunit 17

2.1e-142

70.12

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------
        VFD VNRE FNPSLGINVTGIRENYLQLSIDQGTSVFISLV +GQSCQTVE ANTGILDN NLPFDSLD IELPDRSDPLEKKLRNPN+ TF        
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITF--------

Query:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH
                 D+PIS LSRQSGQ SNDGSGLL    +                                  A      +VL E + V  VWKVPFLQLISH
Subjt:  ---------DRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISH

Query:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ
        PTWNSRKSSWTFFMEVP+S LHP SIQARTSDSH+MN+VTK+QF TKVVVNDDCITIEGEGAP+VVGLF GNSKD+YSMN+YGCDLADL V ILLQVASQ
Subjt:  PTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQ

Query:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG
         ILWLHEEALTWGIK +RDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRK NF+ SDVVPEYRKFLGHLSLEVL STLMDLVSLC+G
Subjt:  TILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNG

Query:  VGGRL
         GG L
Subjt:  VGGRL

SwissProt top hits

e value

%identity

Alignment

F4K460 Mediator of RNA polymerase II transcription subunit 17

1.3e-61

39.22

Show/hide

Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLS
        +FD++NRE FN  +G N++G+REN++++SI QG S+F+SL  SG++    +       ++A L  +S   +E  +  D   KKL  PN  +++  +  + 
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLS

Query:  RQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFF
         +   G        ++I   +    + E+   + +++   +   H+    + L+HLE+                 V KVP+L LISHPTWNSR SSWT F
Subjt:  RQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFF

Query:  MEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG
        M VP SI+     + ++ D  +     KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G
Subjt:  MEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG

Query:  IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC
         KA+R+FLSLS E+ +GE   LVA    +  K       VM++   E+R       + V E RK LGHLSL+VL+S LMDL++LC
Subjt:  IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC

Arabidopsis top hits

e value

%identity

Alignment

AT5G20170.1 RNA polymerase II transcription mediators

9.4e-63

39.22

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Query:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLS
        +FD++NRE FN  +G N++G+REN++++SI QG S+F+SL  SG++    +       ++A L  +S   +E  +  D   KKL  PN  +++  +  + 
Subjt:  VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLS

Query:  RQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFF
         +   G        ++I   +    + E+   + +++   +   H+    + L+HLE+                 V KVP+L LISHPTWNSR SSWT F
Subjt:  RQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFF

Query:  MEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG
        M VP SI+     + ++ D  +     KTQF TKVVV DDCI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G
Subjt:  MEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG

Query:  IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC
         KA+R+FLSLS E+ +GE   LVA    +  K       VM++   E+R       + V E RK LGHLSL+VL+S LMDL++LC
Subjt:  IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLC

Sequences

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CDS sequence

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GTGTTTGATTTAGTGAATCGTGAAACATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGCACCTCGGTCTT
TATCTCTCTTGTGCTATCTGGTCAAAGTTGCCAAACAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGAGATTGAATTAC
CAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCAAATCATATAACCTTTGATAGACCCATTTCATTATTAAGCAGACAATCAGGTCAAGGTTCTAATGATGGA
TCTGGACTTCTTGAGGCGATTCACGTGGAAGACGTGGTGGTTGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAAAAAATTCACAAGAA
AGCTCTTCTTCATCTCGAGGCAGAGGAAGCGGAAGAGGAAGAGGTTTTGGCAGAAACCAAGGAGGTGGTCGAGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCCCATC
CCACTTGGAATTCTCGAAAATCATCATGGACATTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAAT
AATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAA
GGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTTTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAA
CCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAGGATGCC
TTTCCTGGTGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTAGAAGT
TTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAA

mRNA sequence

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Protein sequence

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VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDG
SGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMN
NVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDA
FPGVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL

Lsi08G000660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome