CuGenDBv2

Gene ID	Lsi08G001070
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Complex 1 LYR protein
Genome location	chr08:2209129..2216260
RNA-Seq Expression	Lsi08G001070
Synteny	Lsi08G001070
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039302.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa]

1.0e-39

91.67

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE
        + VAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE

KAG7033478.1 Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-40

89.8

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY
        + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNSDLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE Y
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

2.7e-40

84.76

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

1.0e-39

85.71

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

1.6e-40

87.62

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVKNHIGK ESKKHFVDYVAQKFRDK+ILSKPHSVQQEIKLA DYTFLLNS     DLLFSYNIA+DRSEEMKRILGKSAASVGL+LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

1.3e-40

84.76

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

A0A5D3BQE5 Complex1_LYR domain-containing protein

5.0e-40

91.67

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE
        + VAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE

A0A6J1C0V5 uncharacterized protein LOC111006395

4.0e-37

80.95

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VA+VYR+LLKAVKNHIGK ESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA DY  LLNS     DLLFSYNIAIDRSEEMKRILGKSAASVGL+LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        EAYQP
Subjt:  EAYQP

A0A6J1EY92 uncharacterized protein LOC111439884

2.5e-39

84.76

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVK HIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

A0A6J1HS51 uncharacterized protein LOC111467294

5.0e-40

85.71

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Query:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP
        + VAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLARDYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LP
Subjt:  MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLP

Query:  EAYQP
        E YQP
Subjt:  EAYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.1e-26

58.82

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Query:  AKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY
        A+VYR LLKAV  H+GK + K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS     DLLFSYNIA+DR+EEMKR+L KSAASVGL+LPE Y
Subjt:  AKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY

Query:  QP
        +P
Subjt:  QP

Sequences

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CDS sequence

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ATGACGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGA
TAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTG
ATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

mRNA sequence

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Protein sequence

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MTVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP

Lsi08G001070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome