CuGenDBv2

Gene ID	Lsi08G001440
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome b559 subunit alpha
Genome location	chr08:3074570..3075356
RNA-Seq Expression	Lsi08G001440
Synteny	Lsi08G001440
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002682 - Photosystem II PsbJ IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily IPR037267 - Photosystem II PsbJ superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF1855882.1 hypothetical protein Lal_00028302 [Lupinus albus]

1.7e-47

78.79

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQ
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ

Query:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        QC+SSNDKPNPNYRA TQSNPNEQNVELNRT+
Subjt:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

KAF4396250.1 hypothetical protein F8388_019796 [Cannabis sativa]

5.0e-60

62.22

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR
        MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEF                   +R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR

Query:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMGREVGQMAETTGRIPLWIIGT
        WLAVHGLAVPT  +    SSNDKPNPN+RA TQ NPNEQNVELNRT+                          RP DEM R+VGQMA+TTGRIPLWI GT
Subjt:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMGREVGQMAETTGRIPLWIIGT

Query:  VTGIPVIGLVGIFFYGSYSGLGSSL
        V GI VIGL+GIFFYGSYSGLGSSL
Subjt:  VTGIPVIGLVGIFFYGSYSGLGSSL

KAF4400822.1 hypothetical protein G4B88_004365 [Cannabis sativa]

3.0e-57

66.83

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR
        MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNE FTESRQG+PLITGRFDSLEQLDEF                   +R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR

Query:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        WLAVHGL VPT  +    SSNDKPN N+RA TQSNPNEQNVELNRT+        +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

XP_027187174.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum]

1.3e-47

78.79

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVPT     +YQ
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ

Query:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        QC+SSNDKPNPNYRA TQSNPNEQNVELNRT+
Subjt:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

XP_034508898.1 LOW QUALITY PROTEIN: cytochrome b559 subunit alpha-like [Ailuropoda melanoleuca]

1.6e-45

77.27

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTE+RQGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQ
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ

Query:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        QC+SSNDK N NYRAMTQSNPNEQNVELNRT+
Subjt:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

TrEMBL top hits

e value

%identity

Alignment

A0A0V0HJS1 Cytochrome b559 subunit alpha

2.4e-44

69.08

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF                   +R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR

Query:  WLAVHGLAVPT-----GQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        WLAVHGLAVPT      QYQQC+SSNDK NPNYRAMTQSNPNEQNVELNRT+
Subjt:  WLAVHGLAVPT-----GQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

A0A3Q7X043 Cytochrome b559 subunit alpha

6.2e-48

78.79

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF+RWLAVHGLAVPT     +YQ
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ

Query:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        QC+SSNDKPNPNYRA TQSNPNEQNVELNRT+
Subjt:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

A0A6A5LB38 Cytochrome b559 subunit alpha

8.1e-48

78.79

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF+RWLAVHGLAVPT     QYQ
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPT----GQYQ

Query:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
        QC+SSNDKPNPNYRA TQSNPNEQNVELNRT+
Subjt:  QCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT

A0A7J6HPJ5 Cytochrome b559 subunit alpha

2.4e-60

62.22

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR
        MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQG+PLITGRFDSLEQLDEF                   +R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR

Query:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMGREVGQMAETTGRIPLWIIGT
        WLAVHGLAVPT  +    SSNDKPNPN+RA TQ NPNEQNVELNRT+                          RP DEM R+VGQMA+TTGRIPLWI GT
Subjt:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT--------------------------RPLDEMGREVGQMAETTGRIPLWIIGT

Query:  VTGIPVIGLVGIFFYGSYSGLGSSL
        V GI VIGL+GIFFYGSYSGLGSSL
Subjt:  VTGIPVIGLVGIFFYGSYSGLGSSL

A0A7J6HZU7 Uncharacterized protein

1.5e-57

66.83

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR
        MSGSTGERS ADIITS                  WLFVSTGLAYDVFGSPRPNE FTESRQG+PLITGRFDSLEQLDEF                   +R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF-------------------MR

Query:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        WLAVHGL VPT  +    SSNDKPN N+RA TQSNPNEQNVELNRT+        +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  WLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTTRPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

SwissProt top hits

e value

%identity

Alignment

P56779 Cytochrome b559 subunit alpha

4.9e-26

76.54

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

P59702 Cytochrome b559 subunit alpha

4.9e-26

76.54

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

P69382 Cytochrome b559 subunit alpha

4.9e-26

76.54

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Q4VZH5 Cytochrome b559 subunit alpha

4.9e-26

76.54

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Q70XY9 Cytochrome b559 subunit alpha

4.9e-26

76.54

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00550.1 photosystem II reaction center protein J

1.7e-13

87.5

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Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLW+IGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

ATCG00580.1 photosystem II reaction center protein E

1.3e-26

75.31

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Query:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR
        MSGSTGERSFADIITS                  WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEF R
Subjt:  MSGSTGERSFADIITS------------------WLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMR

Sequences

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CDS sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTA
TTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTA
CCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTGAATTGAATCGTACCACA
CGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGT
CGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTG

mRNA sequence

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AATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGC
CCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTATGCGATGGTTGGCTGTTCA
CGGACTAGCTGTACCTACCGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACGAACAAAATGTTG
AATTGAATCGTACCACACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATT
CCTGTGATCGGTTTAGTCGGTATTTTCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTG

Protein sequence

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MSGSTGERSFADIITSWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFMRWLAVHGLAVPTGQYQQCNSSNDKPNPNYRAMTQSNPNEQNVELNRTT
RPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Lsi08G001440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome