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Lsi08G001560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G001560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA primase
Genome locationchr08:3219138..3222645
RNA-Seq ExpressionLsi08G001560
SyntenyLsi08G001560
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0005658 - alpha DNA polymerase:primase complex (cellular component)
GO:0003896 - DNA primase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR014052 - DNA primase, small subunit, eukaryotic/archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592333.1 DNA primase small subunit, partial [Cucurbita argyrosperma subsp. sororia]3.0e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
XP_004141619.1 DNA primase small subunit [Cucumis sativus]3.0e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS  DWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKNSLSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
XP_022925368.1 DNA primase small subunit [Cucurbita moschata]3.0e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
XP_022973496.1 DNA primase small subunit [Cucurbita maxima]3.0e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
XP_023535939.1 DNA primase small subunit [Cucurbita pepo subsp. pepo]3.0e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase1.5e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS  DWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKNSLSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
A0A6G1EMI8 DNA primase2.1e-1873.02Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LL ELNAAD+  DS  DW+RTSL +S+R+FR++FLQPLL++CKEEIESSYNAK+QQSKNSL+W
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
A0A6J1CKZ3 DNA primase1.7e-2075Show/hide
Query:  LLEELNAADM-------------EVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADM             +VD  TDWDRTSLGESIRFFRS+FLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADM-------------EVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
A0A6J1EEZ9 DNA primase1.5e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
A0A6J1I8T4 DNA primase1.5e-2495.24Show/hide
Query:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        LLEELNAADMEVDS TDWDRTSLGESIRFFRSAFLQPLL+SCKEEIESSYNAKVQQSKN LSW
Subjt:  LLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41880.1 DNA primases;DNA primases3.0e-1454.69Show/hide
Query:  LLEELNAADMEVD-SGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW
        L+EE+N+  + +D    D D + LG+SI+FFRS+FL+PLL+SCKEEIESSY  K+ ++K+S SW
Subjt:  LLEELNAADMEVD-SGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTCTTAGAAGAACTTAATGCAGCAGACATGGAAGTAGATAGTGGGACTGACTGGGATAGAACCTCACTTGGGGAGTCAATTAGGTTTTTCAGATCGGCATTCTT
ACAGCCATTACTGAGATCATGCAAGGAGGAGATAGAATCTTCATACAATGCTAAAGTGCAACAATCGAAAAATTCTCTGAGTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCTCTTAGAAGAACTTAATGCAGCAGACATGGAAGTAGATAGTGGGACTGACTGGGATAGAACCTCACTTGGGGAGTCAATTAGGTTTTTCAGATCGGCATTCTT
ACAGCCATTACTGAGATCATGCAAGGAGGAGATAGAATCTTCATACAATGCTAAAGTGCAACAATCGAAAAATTCTCTGAGTTGGTAGAGAGCTATATTATTAAGTAAAC
ACCCCTTTTTAGTTTCTAGGAGTGCTCCAAACTTTTCCATTGTCTTAGAGGTGCAATGTATATATAAGCAGGGTTGAATTAATTATGTTAAAAGGACCGCTCTGTATATG
TGATGTTTGGCTACCTTACTGATAGGAGGCAAAACGACTTGGCAGATTAGTTTCATTATGATTAAAGTTAGTTTGGGGAAATGACAGCTTGTTGCTTTCG
Protein sequenceShow/hide protein sequence
MMLLEELNAADMEVDSGTDWDRTSLGESIRFFRSAFLQPLLRSCKEEIESSYNAKVQQSKNSLSW