; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G001570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G001570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA primase
Genome locationchr08:3232245..3237437
RNA-Seq ExpressionLsi08G001570
SyntenyLsi08G001570
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0003896 - DNA primase activity (molecular function)
InterPro domainsIPR002755 - DNA primase, small subunit
IPR014052 - DNA primase, small subunit, eukaryotic/archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]9.0e-12061.38Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MVTAAVENGGS+MVIDGNEQKPK  VSDGFDANYLKIYYGKLFPYADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSY EVLKDSFESQLL  QKIFSTEERYEKILDMI DESITS+LRGRWQDNRR SKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVNS                AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE+CD+FDPTTVPTVAQ+ ++
Subjt:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

KAG6592333.1 DNA primase small subunit, partial [Cucurbita argyrosperma subsp. sororia]5.3e-12060.61Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MV  A ENGGS+MVIDGNEQKPKNIVS+GFDANYLKIYYGKLFP+ADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIA+YFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFES+LL SQKIFSTEERYEK+LDMIHDESITSELRGRWQDNRRPSKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVN                 +QGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CD+FDPTTVPTVAQ+ ++
Subjt:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

XP_004141619.1 DNA primase small subunit [Cucumis sativus]5.3e-12061.38Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MVTAAVENGGS+MVIDGNEQKPKN VSDGFDANYLKIYYGKLFPYADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFL RSY EVLKDSFESQLL SQKIFSTEERYEKILDMI DESITS+LRGRWQDNRR SKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVNS                AQGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGRICVPIDPE+CD+FDPTTVPTVAQ+ ++
Subjt:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

XP_023535939.1 DNA primase small subunit [Cucurbita pepo subsp. pepo]4.5e-11960.61Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MV  A ENGGS+MVIDGNEQKPKNIVS+ FDANYLKIYYGKLFP+ADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIA+YFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFES+LL SQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVN                 +QGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CD+FDPTTVPTVAQ+ ++
Subjt:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

XP_038889665.1 DNA primase small subunit [Benincasa hispida]2.1e-12161.64Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MVTAA+ENG S+MVIDGNEQKPKN VSDGFDANYLKIYYGKLFPYADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLL SQKIFSTEERYEKILDMIHDESITSELRG+WQDNRR SKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVNS                AQGMRRHVEEIVFS+TYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE+CD+FDPTTVPTVAQ+ ++
Subjt:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase2.5e-12061.38Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MVTAAVENGGS+MVIDGNEQKPKN VSDGFDANYLKIYYGKLFPYADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFL RSY EVLKDSFESQLL SQKIFSTEERYEKILDMI DESITS+LRGRWQDNRR SKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVNS                AQGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGRICVPIDPE+CD+FDPTTVPTVAQ+ ++
Subjt:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

A0A5A7T8Y3 DNA primase4.3e-12061.38Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MVTAAVENGGS+MVIDGNEQKPK  VSDGFDANYLKIYYGKLFPYADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSY EVLKDSFESQLL  QKIFSTEERYEKILDMI DESITS+LRGRWQDNRR SKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVNS                AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE+CD+FDPTTVPTVAQ+ ++
Subjt:  DVNS----------------AQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

A0A6J1CKZ3 DNA primase3.9e-11357.54Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        M+T AVENGG +M IDG EQKP+ +V DGFD NYLKIYYGKLFPY DFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIAE+FHLYQGNENSRKKISLTGPVLHPFLARSY EVLKDSFES LL SQKIFSTEERYEKILDMI DES+TSELRGRWQ+NR+PSK 
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVN                 AQGMRRHVEEIVFSFTYPRLDLEVTKH NHLLKAPFCVHPKTGRICVPI+PENCD+FDPTTVPT+AQ+ ++
Subjt:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

A0A6J1EEZ9 DNA primase2.8e-11960.36Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------
        MV  A ENGGS+MVIDGNEQKPKNIVS+GFDANYL+IYYGKLFP+ADFFKWMSYGN                                            
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN--------------------------------------------

Query:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD
                                                                                    DDFGFNHILWVFSGRRGVHCWVCD
Subjt:  ----------------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCD

Query:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
        GKARRLSNEQRAAIA+YFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFES+LL SQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN
Subjt:  GKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKN

Query:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
        DVN                 + GMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CD+FDPTTVPTVAQ+ ++
Subjt:  DVN----------------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

A0A6J1I8T4 DNA primase2.2e-11660.37Show/hide
Query:  SEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN------------------------------------------------------
        ++MVIDGNEQKPKNIVS+GFDANYLKIYYGKLFP+ADFFKWMSYGN                                                      
Subjt:  SEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGN------------------------------------------------------

Query:  ------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQ
                                                                          DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQ
Subjt:  ------------------------------------------------------------------DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQ

Query:  RAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVN-------
        RAAIA+YFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFES+LL SQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVN       
Subjt:  RAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVN-------

Query:  ---------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
                  +QGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CD+FDPTTVPTVAQ+ ++
Subjt:  ---------SAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ

SwissProt top hitse value%identityAlignment
O14215 DNA primase small subunit2.3e-4142.4Show/hide
Query:  NDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKI--SLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEK
        ++DFGF HILWV+SGRRG+H W+CD  A  L +  R  IA Y  +  GN     ++  +L  P LHP L RS + +LK +F   +L  Q  ++++E  E 
Subjt:  NDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKI--SLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEK

Query:  ILDMIHDESITSELRGRWQ-DNRRPSKN-----DVNSAQGMRRHV---------EEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENC
        +L ++ D+ + S LR +W+ D  R SKN     D   A G    +         ++IV ++ YPRLD+EV++H+NHLLK+PFCVHP T R+CVPID E  
Subjt:  ILDMIHDESITSELRGRWQ-DNRRPSKN-----DVNSAQGMRRHV---------EEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENC

Query:  DKFDPTTVPTVAQVKQQ
        D F+P  VPTV  + Q+
Subjt:  DKFDPTTVPTVAQVKQQ

P20664 DNA primase small subunit6.0e-4244.81Show/hide
Query:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILD
        +DFGF H LWV+SGRRGVHCWVCD   R+LS+  R+ I EY  L +G ++ +KK+ L   V HPF+ +S I ++K  FE   L  Q I   +E ++KIL 
Subjt:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILD

Query:  MIHDESITSEL-RG---------RWQDNRRPSKNDVNSAQGMRRH------VEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDK
        ++  E+I  EL RG         RW+  R+ +    NS+Q M+          E++  + +PRLD+ V+K +NHLLK+PF VHPKTGRI VPID    D+
Subjt:  MIHDESITSEL-RG---------RWQDNRRPSKNDVNSAQGMRRH------VEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDK

Query:  FDPTTVPTVAQV
        FDP TVPT++ +
Subjt:  FDPTTVPTVAQV

P49642 DNA primase small subunit1.7e-4143.69Show/hide
Query:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKIL-
        +DFGF H LWV+SGRRGVHCWVCD   R+LS+  R+ I EY  L +G ++ +KK+ L+  + HPF+ +S I ++K  FE   L +Q I   +E ++KIL 
Subjt:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKIL-

Query:  ---DMIHDESITSELRG-----RWQDNRRPS---KNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPT
           + IHDE   S  +      RW+  ++ +   +N++ + +       EI+  + +PRLD+ V+K +NHLLK+PF VHPKTGRI VPID +  D+FDP 
Subjt:  ---DMIHDESITSELRG-----RWQDNRRPS---KNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPT

Query:  TVPTVA
        TVPT++
Subjt:  TVPTVA

Q24317 DNA primase small subunit2.8e-3940.09Show/hide
Query:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHL--YQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKI
        +DFGF HI+W+FSGRRG+HCWVCD +AR L    R A+AEY ++  Y             G   H  L R+ +++++  FE  +L  Q +F T +   K+
Subjt:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHL--YQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKI

Query:  LDMIHDESITSELRGRWQDN-------RRPSKNDVNSAQGMRRH------------VEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDP
        L+M+HD++   EL    Q N       R   ++ +  A  MR              V EI     YPRLD+ VT+  NHLLKAPFC+HP TG++CVP   
Subjt:  LDMIHDESITSELRGRWQDN-------RRPSKNDVNSAQGMRRH------------VEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDP

Query:  ENCDKFDPTTVPTVAQV
            KFDPTTVPT+ Q+
Subjt:  ENCDKFDPTTVPTVAQV

Q7KQM1 DNA primase small subunit8.4e-3635.81Show/hide
Query:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARS------YIEVL---KDSFESQLLYSQKIFS-
        +DF F HILWV+SGRRG+HCWV D   R  + + RAA+A+Y ++  G++  +KK+S+ G   +P   R+      Y +VL   +D F+    + QK+   
Subjt:  DDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARS------YIEVL---KDSFESQLLYSQKIFS-

Query:  ------------TEERYEKILDMIHDESITS----ELRGRWQDNRRPS----KNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKT
                       +  ++ + I++ +  S    E      +   PS    + +V+    M   V+EIVF FTYPRLD+ V+K +NHLLK+PFC+H  T
Subjt:  ------------TEERYEKILDMIHDESITS----ELRGRWQDNRRPS----KNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKT

Query:  GRICVPIDPENCDKFDPTTVPTVAQVKQQ
        GR+CVP+D +N + F+P +VPT+  +++Q
Subjt:  GRICVPIDPENCDKFDPTTVPTVAQVKQQ

Arabidopsis top hitse value%identityAlignment
AT5G41880.1 DNA primases;DNA primases1.3e-7640Show/hide
Query:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGND-------------------------------------------
        M     E  G +M+ID  + KPK  + + F+ +YL+IYYG LFPY D  KW+SYG+D                                           
Subjt:  MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGND-------------------------------------------

Query:  -------------------------------------------------------------------------------DFGFNHILWVFSGRRGVHCWV
                                                                                       DFGF HILWVFSGRRGVHCWV
Subjt:  -------------------------------------------------------------------------------DFGFNHILWVFSGRRGVHCWV

Query:  CDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPS
        CD KARRL+NEQR+A+AEYF +Y+GNEN+ KK+ L G  LHPFLARSY++ +K  FE +L  +Q IFS++E+YEKIL MI DE I ++LRG+W+++ R S
Subjt:  CDGKARRLSNEQRAAIAEYFHLYQGNENSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPS

Query:  KNDV------------------NSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ
         ++                   N A  +R  VEEIVF+FTYPR+DLEV+K MNHLLKAPFCVHPKTGR+CVPIDP NCD+FDP  VPT++Q+ ++
Subjt:  KNDV------------------NSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACTGCAGCGGTTGAGAATGGCGGAAGCGAAATGGTAATTGACGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAAT
TTACTACGGGAAGCTTTTTCCGTATGCTGATTTTTTCAAATGGATGTCTTATGGAAATGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGGCGTGGTG
TTCATTGTTGGGTTTGTGATGGCAAAGCTAGAAGGTTGTCTAACGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATACCAGGGTAATGAAAATAGTCGCAAGAAA
ATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTTGCGAGATCGTACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTCTATAGTCAAAAGATTTTCTCTAC
TGAGGAAAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGAGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTCAACT
CAGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTATCCTAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTC
TGTGTTCATCCCAAAACAGGTCGTATTTGTGTCCCTATCGACCCTGAAAACTGTGATAAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGGTAAAACAACAAGAAGG
CATATAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAAGAAGAAGAAAAGAGAGAAAAAGGAAGCCAATTTTTATTAATTTTAAAAAAGATACCCATTTTTCATTTGAACCGGTGAGTCTCCATATCCCTCAGTCTCACCG
TCGCCCGCCGTTCTCCGACGCCCTCGTGTGCCTCGCCAACACCGTCCGCCTGCTGTAAGGCTCAATTTACAGGTGCCGTGGCGAAAATGGTTACTGCAGCGGTTGAGAAT
GGCGGAAGCGAAATGGTAATTGACGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTTCCGTA
TGCTGATTTTTTCAAATGGATGTCTTATGGAAATGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGGCGTGGTGTTCATTGTTGGGTTTGTGATGGCA
AAGCTAGAAGGTTGTCTAACGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATACCAGGGTAATGAAAATAGTCGCAAGAAAATTTCTCTAACGGGTCCAGTTCTT
CATCCATTTCTTGCGAGATCGTACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTCTATAGTCAAAAGATTTTCTCTACTGAGGAAAGATATGAGAAAATATT
AGATATGATTCATGATGAATCCATTACCTCAGAGCTTCGAGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTCAACTCAGCACAAGGAATGCGTAGGCATG
TTGAAGAGATTGTTTTCTCTTTTACCTATCCTAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGT
ATTTGTGTCCCTATCGACCCTGAAAACTGTGATAAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGGTAAAACAACAAGAAGGCATATAG
Protein sequenceShow/hide protein sequence
MVTAAVENGGSEMVIDGNEQKPKNIVSDGFDANYLKIYYGKLFPYADFFKWMSYGNDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRKK
ISLTGPVLHPFLARSYIEVLKDSFESQLLYSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSAQGMRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPF
CVHPKTGRICVPIDPENCDKFDPTTVPTVAQVKQQEGI