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Lsi08G001750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G001750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlycerophosphodiester phosphodiesterase
Genome locationchr08:3614502..3615236
RNA-Seq ExpressionLsi08G001750
SyntenyLsi08G001750
Gene Ontology termsGO:0006071 - glycerol metabolic process (biological process)
GO:0006629 - lipid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008889 - glycerophosphodiester phosphodiesterase activity (molecular function)
InterPro domainsIPR017946 - PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
IPR030395 - Glycerophosphodiester phosphodiesterase domain
IPR044236 - Glycerophosphodiester phosphodiesterase GDPD4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039349.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis melo var. makuwa]8.1e-6090.55Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA IAILPPIYFHFKLKRFQQ+QQ++C WL  PPLVCAHGGDSSKAFPNTMDAY+IALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

XP_004141522.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X4 [Cucumis sativus]2.5e-6192.91Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA+IAILPPIYFHFKLKRFQQ+QQR+CKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

XP_011656047.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X3 [Cucumis sativus]2.5e-6192.91Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA+IAILPPIYFHFKLKRFQQ+QQR+CKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

XP_031741801.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X1 [Cucumis sativus]2.5e-6192.91Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA+IAILPPIYFHFKLKRFQQ+QQR+CKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

XP_031741802.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis sativus]2.5e-6192.91Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA+IAILPPIYFHFKLKRFQQ+QQR+CKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

TrEMBL top hitse value%identityAlignment
A0A0A0KSR2 Glycerophosphodiester phosphodiesterase1.2e-6192.91Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA+IAILPPIYFHFKLKRFQQ+QQR+CKWL  PPLVCAHGGDSSKAFPNTMDAYSIALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

A0A1S3CAB9 Glycerophosphodiester phosphodiesterase1.9e-5989.76Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA IAILPPIYFHFKLKR QQ+QQ++C WL  PPLVCAHGGDSSKAFPNTMDAY+IALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

A0A1S3CAF8 Glycerophosphodiester phosphodiesterase1.9e-5989.76Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA IAILPPIYFHFKLKR QQ+QQ++C WL  PPLVCAHGGDSSKAFPNTMDAY+IALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

A0A5A7TDK6 Glycerophosphodiester phosphodiesterase3.9e-6090.55Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLA IAILPPIYFHFKLKRFQQ+QQ++C WL  PPLVCAHGGDSSKAFPNTMDAY+IALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

A0A6J1IF47 Glycerophosphodiester phosphodiesterase1.6e-5888.19Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        M IS SR GRRRWIG RTWRNRFPFR SSRR+FRLTILCLALIAILPPI+FHFKLKRFQQMQQ  CKW+NDPPLVCAHGGDSSKAFPNTMDAYS+ALRSQ
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
        ANCIEVDVSRSSDGVLFALHDR L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

SwissProt top hitse value%identityAlignment
F4I8H8 Glycerophosphodiester phosphodiesterase GDPD41.0e-3357.48Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAI   R  RR + G  T R RF     SR   R  +  +  +AI PP+YFHFKL+R +Q+  + C WL+ PPLVCAHGGDS+ AFPNTMDAYS A+RS+
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
         +CIEVDVSRSSDGVLFALH+R L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL

O14169 Phosphatidylglycerol phospholipase C5.3e-0643.86Show/hide
Query:  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLF
        PPLV AH G  +K   NT+ A+  A+++ A+C+E DV  + D V+  LHDR L+++F
Subjt:  PPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLF

P9WMU2 Probable glycerophosphodiester phosphodiesterase 11.7e-0438.71Show/hide
Query:  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLFTASHLI
        P V AH G S+    +T+ AY +AL+  A+ +E DV  + DG L  +HDR L +  T + L+
Subjt:  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLFTASHLI

P9WMU3 Probable glycerophosphodiester phosphodiesterase 11.7e-0438.71Show/hide
Query:  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLFTASHLI
        P V AH G S+    +T+ AY +AL+  A+ +E DV  + DG L  +HDR L +  T + L+
Subjt:  PLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSRSSDGVLFALHDRYLSKLFTASHLI

Arabidopsis top hitse value%identityAlignment
AT1G71340.1 PLC-like phosphodiesterases superfamily protein7.3e-3557.48Show/hide
Query:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ
        MAI   R  RR + G  T R RF     SR   R  +  +  +AI PP+YFHFKL+R +Q+  + C WL+ PPLVCAHGGDS+ AFPNTMDAYS A+RS+
Subjt:  MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQ

Query:  ANCIEVDVSRSSDGVLFALHDRYLSKL
         +CIEVDVSRSSDGVLFALH+R L ++
Subjt:  ANCIEVDVSRSSDGVLFALHDRYLSKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCTCCACCTCTAGACTTGGAAGAAGGCGTTGGATTGGGCAAAGAACATGGCGTAATCGATTCCCCTTCAGATTCTCTTCCCGACGACTCTTTCGTCTCACTAT
CCTATGCCTCGCTTTGATCGCAATTCTGCCTCCCATTTACTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGGGACTGCAAATGGCTGAATGATCCTCCTC
TTGTGTGTGCTCATGGGGGCGACTCATCTAAGGCTTTCCCAAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGT
TCTTCAGATGGAGTCTTATTTGCACTTCATGACAGGTATTTATCAAAACTGTTTACAGCCAGTCACCTTATCATGTTGGTCCCTAAATCAGTTAATCAGGATAGCCCTTG
TCAATTTTCTTCTCGTAATTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAACTCCTTACCCTCTGGTGTGGGCAGTCTCTCCCAGTCCGCAGGTGTTGGAGAAAATTTTGATTCAGAAAGTTGCCATCCGAATGGCGATCTCCACCTCTAGACT
TGGAAGAAGGCGTTGGATTGGGCAAAGAACATGGCGTAATCGATTCCCCTTCAGATTCTCTTCCCGACGACTCTTTCGTCTCACTATCCTATGCCTCGCTTTGATCGCAA
TTCTGCCTCCCATTTACTTCCATTTCAAGCTCAAGCGCTTTCAGCAGATGCAACAAAGGGACTGCAAATGGCTGAATGATCCTCCTCTTGTGTGTGCTCATGGGGGCGAC
TCATCTAAGGCTTTCCCAAACACTATGGATGCATATAGCATAGCTCTTCGTTCTCAAGCCAACTGCATTGAAGTTGATGTTTCTCGTTCTTCAGATGGAGTCTTATTTGC
ACTTCATGACAGGTATTTATCAAAACTGTTTACAGCCAGTCACCTTATCATGTTGGTCCCTAAATCAGTTAATCAGGATAGCCCTTGTCAATTTTCTTCTCGTAATTGA
Protein sequenceShow/hide protein sequence
MAISTSRLGRRRWIGQRTWRNRFPFRFSSRRLFRLTILCLALIAILPPIYFHFKLKRFQQMQQRDCKWLNDPPLVCAHGGDSSKAFPNTMDAYSIALRSQANCIEVDVSR
SSDGVLFALHDRYLSKLFTASHLIMLVPKSVNQDSPCQFSSRN