CuGenDBv2

Gene ID	Lsi08G001760
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Glycerophosphodiester phosphodiesterase
Genome location	chr08:3619726..3623707
RNA-Seq Expression	Lsi08G001760
Synteny	Lsi08G001760
Gene Ontology terms	GO:0006071 - glycerol metabolic process (biological process) GO:0006629 - lipid metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0008889 - glycerophosphodiester phosphodiesterase activity (molecular function)
InterPro domains	IPR017946 - PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily IPR030395 - Glycerophosphodiester phosphodiesterase domain IPR044236 - Glycerophosphodiester phosphodiesterase GDPD4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039349.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis melo var. makuwa]

1.3e-74

91.19

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSVQQVILDAKVGPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSLARDIIR S DIKVGYIVM DPSTG+RTNLLRMKGAKVVGVYHPLID +LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ILHRR++KVY WTVDD +SMKRML EGVDAVVTSNPTLLGSVMQDTRTTCLENGFS SS
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

KAG7025128.1 Glycerophosphodiester phosphodiesterase GDPD4, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-74

88.68

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSV+QVILDAK+GPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSL RDII+LSSD+KVGYIVMMDPSTG+RTNLLRMKGAKVVG YHPLIDE+LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ++HRR+KKVY WTVDD DSMKRML EGVDAVVTSNPTLLGSVMQD RTTCLENGFS  S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

XP_022930187.1 glycerophosphodiester phosphodiesterase GDPD4 [Cucurbita moschata]

2.9e-74

88.68

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSV+QVILDAK+GPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSL RDII+LSSD+KVGYIVMMDPSTG+RTNLLRMKGAKVVG YHPLIDE+LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ++HRR+KKVY WTVDD DSMKRML EGVDAVVTSNPTLLGSVMQD RTTCLENGFS  S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

XP_022974073.1 glycerophosphodiester phosphodiesterase GDPD4 [Cucurbita maxima]

2.9e-74

88.68

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSV+QVILDAK+GPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSL RDII+LSSD+KVGYIVMMDPSTG+RTNLLRMKGAKVVG YHPLIDE+LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ++HRR+KKVY WTVDD DSMKRML EGVDAVVTSNPTLLGSVMQD RTTCLENGFS  S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

XP_038890901.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X7 [Benincasa hispida]

8.2e-77

92.41

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        L++KSVQQVILDAKVGPPSYENGLAKDIISV+EKT+CKNCLVWAKSDSLARD+IRLSSDIKVGYIVMMDP+TG+RTNLLRMK AKVVGVYHPLIDENLMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFS
        ILHRR+K VY WTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFS S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSR2 Glycerophosphodiester phosphodiesterase

4.6e-73

87.8

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Query:  KEAL--ISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLID
        +EAL  ISKSVQQVILDAKVGPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSLARDIIR SSDIKVGYIVM DPSTG+RTNLLRMKGAKVVGVYH LID
Subjt:  KEAL--ISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLID

Query:  ENLMRILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
         +LMRILHRR++K Y WTVDD +SMKRML EGVDAVVTSNPTLLGSVMQ++RTTCLENGFS SS
Subjt:  ENLMRILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

A0A1S3CAB9 Glycerophosphodiester phosphodiesterase

1.9e-74

90.57

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSVQQVILDAKVGPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSLARDIIR S DIKVGYIVM DPSTG+RTNLLRMKGAKVVGVYHPLID +L+R
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ILHRR++KVY WTVDD +SMKRML EGVDAVVTSNPTLLGSVMQDTRTTCLENGFS SS
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

A0A5A7TDK6 Glycerophosphodiester phosphodiesterase

6.4e-75

91.19

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSVQQVILDAKVGPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSLARDIIR S DIKVGYIVM DPSTG+RTNLLRMKGAKVVGVYHPLID +LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ILHRR++KVY WTVDD +SMKRML EGVDAVVTSNPTLLGSVMQDTRTTCLENGFS SS
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

A0A6J1EPP0 Glycerophosphodiester phosphodiesterase

1.4e-74

88.68

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSV+QVILDAK+GPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSL RDII+LSSD+KVGYIVMMDPSTG+RTNLLRMKGAKVVG YHPLIDE+LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ++HRR+KKVY WTVDD DSMKRML EGVDAVVTSNPTLLGSVMQD RTTCLENGFS  S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

A0A6J1IF47 Glycerophosphodiester phosphodiesterase

1.4e-74

88.68

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Query:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR
        LISKSV+QVILDAK+GPPSYENGLAKDIISV+EKTQCKNCLVWAKSDSL RDII+LSSD+KVGYIVMMDPSTG+RTNLLRMKGAKVVG YHPLIDE+LMR
Subjt:  LISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMR

Query:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS
        ++HRR+KKVY WTVDD DSMKRML EGVDAVVTSNPTLLGSVMQD RTTCLENGFS  S
Subjt:  ILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFSFSS

SwissProt top hits

e value

%identity

Alignment

F4I8H8 Glycerophosphodiester phosphodiesterase GDPD4

1.6e-59

70.06

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Query:  ALISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLM
        ALIS SV++VILDAKVGPP YE GLA+DI+S+IE+ QC NC+VWAKSD+LARDIIR + D  VGYIVM+DP TG R +LLRMKGA+VVGVYHPLIDE L+
Subjt:  ALISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLM

Query:  RILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFS
        R++ RR K+VY WTVDD+D MKRML  GVDAVVTS+P++   +M+D RT CLE GFS
Subjt:  RILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFS

Arabidopsis top hits

e value

%identity

Alignment

AT1G71340.1 PLC-like phosphodiesterases superfamily protein

1.2e-60

70.06

Show/hide

Query:  ALISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLM
        ALIS SV++VILDAKVGPP YE GLA+DI+S+IE+ QC NC+VWAKSD+LARDIIR + D  VGYIVM+DP TG R +LLRMKGA+VVGVYHPLIDE L+
Subjt:  ALISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVWAKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLM

Query:  RILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFS
        R++ RR K+VY WTVDD+D MKRML  GVDAVVTS+P++   +M+D RT CLE GFS
Subjt:  RILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLENGFS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTTTTTCCCCCTCTTGGAGCCATGAAATTCAAGACATTGGCTGTGCGATAAACCTGTCACTTTCTAGTGTAAATCCCTACATCATCTTGTTTCCTGGCCCTGGGAG
GCCACTATTCTACCTGATGCTTGTCAAGTGTCATGGAAGCATAAACATCCGAAGTGTAGGAGTCGTTGTACTCAGTAGAAACAAGGAGGCATTAATATCAAAATCAGTTC
AGCAGGTGATTCTGGATGCAAAGGTTGGGCCACCGTCCTATGAAAATGGGCTTGCAAAAGATATCATTTCTGTTATCGAGAAGACACAATGTAAAAATTGTCTTGTATGG
GCGAAGAGTGATAGCTTAGCAAGGGACATAATCAGATTATCATCAGATATTAAGGTGGGGTATATTGTAATGATGGACCCATCTACTGGGAAAAGAACCAACTTGCTGAG
AATGAAAGGAGCCAAGGTGGTTGGTGTCTATCATCCATTGATTGATGAAAATCTTATGCGAATACTGCACAGGAGAGAGAAAAAGGTGTATACATGGACAGTTGATGATA
GCGATTCGATGAAAAGAATGTTAGCTGAAGGAGTAGATGCTGTCGTTACAAGCAACCCGACATTACTTGGAAGTGTAATGCAAGATACCAGAACTACATGCCTTGAGAAT
GGTTTTTCATTTTCATCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MLFSPSWSHEIQDIGCAINLSLSSVNPYIILFPGPGRPLFYLMLVKCHGSINIRSVGVVVLSRNKEALISKSVQQVILDAKVGPPSYENGLAKDIISVIEKTQCKNCLVW
AKSDSLARDIIRLSSDIKVGYIVMMDPSTGKRTNLLRMKGAKVVGVYHPLIDENLMRILHRREKKVYTWTVDDSDSMKRMLAEGVDAVVTSNPTLLGSVMQDTRTTCLEN
GFSFSS

Lsi08G001760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome