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Lsi08G001830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G001830
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNAC domain protein
Genome locationchr08:3967126..3969663
RNA-Seq ExpressionLsi08G001830
SyntenyLsi08G001830
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003441 - NAC domain
IPR033519 - Protein BEARSKIN
IPR036093 - NAC domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0494321.1 hypothetical protein HPP92_005315 [Vanilla planifolia]7.4e-1750Show/hide
Query:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE---------------------------GRRHKTSGIFSAIKTGNTQQDQEPTEPP
        SS+  S  GGVPPGFRFHPTDEELL YYLKKK SF++FD+EV+RE                            RR +TSG FSAI+T +  Q +EPT P 
Subjt:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE---------------------------GRRHKTSGIFSAIKTGNTQQDQEPTEPP

Query:  TPASGRPPEETN
        +PASG+P   TN
Subjt:  TPASGRPPEETN

KAG6592284.1 Protein BEARSKIN2, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1650Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR
        M SSGGS+GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEV+RE   +K     +    + G+T Q++       +   P   R    TNA F   T 
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR

Query:  RSECVKHWFSTV
        R +C+++ +  +
Subjt:  RSECVKHWFSTV

KAG7025122.1 Protein BEARSKIN2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1650Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR
        M SSGGS GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEV+RE   +K     +    + G+T Q++       +   P   R    TNA F   T 
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR

Query:  RSECVKHWFSTV
        R +C+++ +  +
Subjt:  RSECVKHWFSTV

XP_022930177.1 protein BEARSKIN2-like [Cucurbita moschata]2.2e-1650Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR
        M SSGGS GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEV+RE   +K     +    + G+T Q++       +   P   R    TNA F   T 
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR

Query:  RSECVKHWFSTV
        R +C+++ +  +
Subjt:  RSECVKHWFSTV

XP_038890265.1 protein BEARSKIN2-like [Benincasa hispida]6.3e-1652.83Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR
        M SSGG +GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE   +K     +    + G+T Q++       +   P   R    TNA F   T 
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR

Query:  RSECVK
        R +C++
Subjt:  RSECVK

TrEMBL top hitse value%identityAlignment
A0A0A0KXR9 NAC domain-containing protein5.7e-1548.7Show/hide
Query:  MSSSGGSN---GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVI
        M SSGG +   GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE   +K     +    + G+T Q++       +   P   R    TNA F  
Subjt:  MSSSGGSN---GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVI

Query:  LTRRSECVKHWFSTV
         T R +C+++ +  +
Subjt:  LTRRSECVKHWFSTV

A0A5A7P463 NAC domain protein4.4e-1550.94Show/hide
Query:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR
        SSSGG  GGGVPPGFRFHPTDEELLH+YLKKKVSFQKFDMEV+RE   +K     +    K G+T Q++       +   P   R    T A F   T R
Subjt:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR

Query:  SECVKH
         +C+++
Subjt:  SECVKH

A0A6J1EPM9 protein BEARSKIN2-like1.0e-1650Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR
        M SSGGS GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEV+RE   +K     +    + G+T Q++       +   P   R    TNA F   T 
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTR

Query:  RSECVKHWFSTV
        R +C+++ +  +
Subjt:  RSECVKHWFSTV

A0A6J1IAC2 protein BEARSKIN2-like1.5e-1548.65Show/hide
Query:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR
        SS GG  GGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEV+RE   +K     +    + G+T Q++       +   P   R    TNA F   T R
Subjt:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR

Query:  SECVKHWFSTV
         +C+++ +  +
Subjt:  SECVKHWFSTV

A0A7J0GG45 NAC domain containing protein 703.4e-1546.85Show/hide
Query:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR
        SS+GGS GGGVPPGFRFHPTDEELLHYYLKKK+SFQKF+MEV+R+   +K     +    + G++ Q++       +   P   R    TNA F   T R
Subjt:  SSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRR

Query:  SECVKHWFSTV
         +C+++ F  +
Subjt:  SECVKHWFSTV

SwissProt top hitse value%identityAlignment
Q5Z6B6 NAC domain-containing protein 761.6e-0963.04Show/hide
Query:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE
        M  SGG+    VPPGFRFHPTDEELL+YYL+KKV+++  D++V+RE
Subjt:  MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE

Q9C878 Protein BEARSKIN14.7e-1441.51Show/hide
Query:  SNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSECVK
        S+ GGVPPGFRFHPTDEELLHYYLKKK+S++KF+MEV++E   +K     +    K G+T Q++       +   P   R    T++ F   T R +C++
Subjt:  SNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSECVK

Query:  HWFSTV
        + +  +
Subjt:  HWFSTV

Q9LPI7 NAC domain-containing protein 123.1e-1055.17Show/hide
Query:  VPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQD
        VPPGFRFHPT+EELLHYYL+KKV+ QK D++V+RE   +K     I    + G+T Q+
Subjt:  VPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQD

Q9MA17 Protein SOMBRERO7.0e-1065.96Show/hide
Query:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE
        SSS  + GG   VPPGFRFHPT+EELL+YYLKKKVS++  D++V+RE
Subjt:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE

Q9SV87 Protein BEARSKIN21.9e-1544.44Show/hide
Query:  GGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSEC
        G S+ GGVPPGFRFHPTDEELLHYYLKKK+S+QKF+MEV+RE   +K     +    K G+T Q++       +   P   R    T+A F   T R +C
Subjt:  GGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSEC

Query:  VKHWFSTV
        +++ +  +
Subjt:  VKHWFSTV

Arabidopsis top hitse value%identityAlignment
AT1G32770.1 NAC domain containing protein 122.2e-1155.17Show/hide
Query:  VPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQD
        VPPGFRFHPT+EELLHYYL+KKV+ QK D++V+RE   +K     I    + G+T Q+
Subjt:  VPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQD

AT1G33280.1 NAC domain containing protein 153.3e-1541.51Show/hide
Query:  SNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSECVK
        S+ GGVPPGFRFHPTDEELLHYYLKKK+S++KF+MEV++E   +K     +    K G+T Q++       +   P   R    T++ F   T R +C++
Subjt:  SNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSECVK

Query:  HWFSTV
        + +  +
Subjt:  HWFSTV

AT1G79580.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein5.0e-1165.96Show/hide
Query:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE
        SSS  + GG   VPPGFRFHPT+EELL+YYLKKKVS++  D++V+RE
Subjt:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE

AT1G79580.2 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein5.0e-1165.96Show/hide
Query:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE
        SSS  + GG   VPPGFRFHPT+EELL+YYLKKKVS++  D++V+RE
Subjt:  SSSGGSNGG--GVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVRE

AT4G10350.1 NAC domain containing protein 701.3e-1644.44Show/hide
Query:  GGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSEC
        G S+ GGVPPGFRFHPTDEELLHYYLKKK+S+QKF+MEV+RE   +K     +    K G+T Q++       +   P   R    T+A F   T R +C
Subjt:  GGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTS--GIFSAIKTGNTQQDQ----EPTEPPTPASGRPPEETNA-FVILTRRSEC

Query:  VKHWFSTV
        +++ +  +
Subjt:  VKHWFSTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCTCGGGCGGCAGCAACGGCGGTGGCGTTCCTCCCGGTTTTCGGTTCCATCCTACCGATGAAGAACTCCTTCATTACTACTTGAAGAAGAAGGTGTCGTTTCA
AAAATTCGACATGGAAGTCGTTCGAGAGGGTCGACGCCACAAAACGAGTGGTATTTTTTCAGCCATAAAGACAGGAAATACCCAACAGGATCAAGAACCAACAGAGCCAC
CAACGCCGGCTTCTGGAAGGCCACCGGAAGAGACAAATGCATTCGTAATTCTTACAAGAAGATCGGAATGCGTAAAACACTGGTTTTCTACCGTGGCCGAGCTCCTCACG
GCCAGAAAACTGACTGGATCATGCATGAATATCGCCTCGAAGATTCCGATGACCCTCTTTCCAATAACTCTG
mRNA sequenceShow/hide mRNA sequence
GATATTTAATCATTAGAGCATGTAAAATGAGCTCCTCGGGCGGCAGCAACGGCGGTGGCGTTCCTCCCGGTTTTCGGTTCCATCCTACCGATGAAGAACTCCTTCATTAC
TACTTGAAGAAGAAGGTGTCGTTTCAAAAATTCGACATGGAAGTCGTTCGAGAGGGTCGACGCCACAAAACGAGTGGTATTTTTTCAGCCATAAAGACAGGAAATACCCA
ACAGGATCAAGAACCAACAGAGCCACCAACGCCGGCTTCTGGAAGGCCACCGGAAGAGACAAATGCATTCGTAATTCTTACAAGAAGATCGGAATGCGTAAAACACTGGT
TTTCTACCGTGGCCGAGCTCCTCACGGCCAGAAAACTGACTGGATCATGCATGAATATCGCCTCGAAGATTCCGATGACCCTCTTTCCAATAACTCTG
Protein sequenceShow/hide protein sequence
MSSSGGSNGGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVVREGRRHKTSGIFSAIKTGNTQQDQEPTEPPTPASGRPPEETNAFVILTRRSECVKHWFSTVAELLT
ARKLTGSCMNIASKIPMTLFPITL