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Lsi08G001850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G001850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr08:3972167..3983781
RNA-Seq ExpressionLsi08G001850
SyntenyLsi08G001850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDN96898.1 putative Ty-1 copia retrotransposon [Phaseolus vulgaris]6.2e-1535.77Show/hide
Query:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYK
        M+K++ +   K +C +CH++ HWKKDC     K  KK K P+ +  +   ++     S  +++       S S    +W+LDSGC YHM   ++WF+ ++
Subjt:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYK

Query:  SWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN
          DGG+V+MGN + C+ VGIGS+ L+  DG+  +LR+
Subjt:  SWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN

KAG6420009.1 hypothetical protein SASPL_116523 [Salvia splendens]8.0e-1539.71Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSL-NRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKS
        K++ K  NK KCNYC K+ H K DC+ L N+++N  N+N    E S+ A ES  +   A         ++  ++S +W+LDSGC YH+  +++ F TY+S
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSL-NRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKS

Query:  WDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN
        +DGG V MGN+  C++VG G+V +++ DG    L N
Subjt:  WDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN

KHN13665.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]2.8e-1537.88Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW
        K   K KN+  C YC KE H++K+C     ++ KKN      E  +      +  ++ L+I       S  + S +W+LDSGC +HMT + EWF +YK  
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW

Query:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATL
        DGG V MGN+  C ++GIG++ L++QDG   L
Subjt:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATL

PHT53674.1 hypothetical protein CQW23_08136 [Capsicum baccatum]3.3e-1637.76Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW
        +++ KGKN   C YC K +H   +C+ L  KQN+++K  KQ E S  A+           I    E+ S++    +WVLDSGC +HM+ +++WF TY+S+
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW

Query:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIH
        +GGLV MGN   C++VG G++ ++  DG       +TLT   H
Subjt:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIH

PON41343.1 Zinc finger, CCHC-type [Parasponia andersonii]8.0e-1535.82Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW
        ++  K K + KC +CHKE H+K+DC    +K ++K K+P +      A+ +S  +  A  +   DE+SS+     +W++DSGC +HM   K WF   +  
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW

Query:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLR
        DGG V +GN+  C++ GIGSV +++ DG   +L+
Subjt:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLR

TrEMBL top hitse value%identityAlignment
A0A077SK66 Putative Ty-1 copia retrotransposon3.0e-1535.77Show/hide
Query:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYK
        M+K++ +   K +C +CH++ HWKKDC     K  KK K P+ +  +   ++     S  +++       S S    +W+LDSGC YHM   ++WF+ ++
Subjt:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYK

Query:  SWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN
          DGG+V+MGN + C+ VGIGS+ L+  DG+  +LR+
Subjt:  SWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN

A0A151T3S7 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-1537.5Show/hide
Query:  AKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKS
        ++++ KGKNK +C  C KE H+KKDC                     P  ES    ++ L +T++D       T  +W+LDSGC +HMT +K+WF TY  
Subjt:  AKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKS

Query:  WDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN
         DGG V +GN+ +C+++GIGSV L++ DG   +L++
Subjt:  WDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN

A0A2G2X831 Uncharacterized protein1.6e-1637.76Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW
        +++ KGKN   C YC K +H   +C+ L  KQN+++K  KQ E S  A+           I    E+ S++    +WVLDSGC +HM+ +++WF TY+S+
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW

Query:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIH
        +GGLV MGN   C++VG G++ ++  DG       +TLT   H
Subjt:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIH

A0A2P5AXR9 Zinc finger, CCHC-type3.9e-1535.82Show/hide
Query:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW
        ++  K K + KC +CHKE H+K+DC    +K ++K K+P +      A+ +S  +  A  +   DE+SS+     +W++DSGC +HM   K WF   +  
Subjt:  KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSW

Query:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLR
        DGG V +GN+  C++ GIGSV +++ DG   +L+
Subjt:  DGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLR

G8DCX4 Putative Ty-1 copia retrotransposon5.1e-1536.23Show/hide
Query:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQN-KKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTY
        M+K++ +   K +C +CH++ HWKKDC  L +K+   ++ N  + +  +   ES  S   +L         S S    +W+LDSGC YHM   ++WF+ +
Subjt:  MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQN-KKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTY

Query:  KSWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN
        +  DGG+V+MGN + C+ VGIGS+ L+  DG+  +LR+
Subjt:  KSWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAA
AAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCAC
AAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGG
AATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAG
CAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTC
TCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCC
ATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCT
CCTCCTTCTTCATTCCCGGCACATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAA
AAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCAC
AAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGG
AATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAG
CAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTC
TCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCC
ATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCT
CCTCCTTCTTCATTCCCGGCACATCTAG
Protein sequenceShow/hide protein sequence
MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMG
NHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIHNSKKIDLSQFLPRPAGLVQLGGRRLFIQNADHSRTLNLLRRKLRQSDLKNPILKLSFNRLQIRITRQPKLPPEFS
IASFQSMPMLTLFLLFPFPLSDHFQNPVFLVQFDLQLLLLHSRHI