CuGenDBv2

Gene ID	Lsi08G002080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ribosomal protein L16
Genome location	chr08:4583283..4583531
RNA-Seq Expression	Lsi08G002080
Synteny	Lsi08G002080
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR020798 - Ribosomal protein L16, conserved site IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AQK77846.1 ribosomal protein L16, partial [Lophophytum mirabile subsp. bolivianum]

3.0e-37

91.46

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFR+ GKIWVRVLAD+PITGKPT+VRMGRGKGNPTGWIACVSTGQIPFE+DGVSLSNARQ  TLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

KAF4609391.1 ribosomal protein L16 [Acer yangbiense]

6.7e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

WP_131767160.1 50S ribosomal protein L16 [Candidatus Frankia datiscae]

6.7e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

YP_007905726.1 ribosomal protein L16 [Liriodendron tulipifera]

6.7e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

YP_009709943.1 ribosomal protein L16 [Manihot esculenta]

6.7e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

TrEMBL top hits

e value

%identity

Alignment

A0A1Q1AMB0 Ribosomal protein L16

1.5e-37

91.46

Show/hide

Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFR+ GKIWVRVLAD+PITGKPT+VRMGRGKGNPTGWIACVSTGQIPFE+DGVSLSNARQ  TLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

A0A4D6QG76 Ribosomal protein L16

3.3e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

B6VJV9 Ribosomal protein L16

3.3e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

B9TLE8 60S ribosomal protein L16, putative

3.3e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

M9WGA1 Ribosomal protein L16

3.3e-37

93.9

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRVLADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

SwissProt top hits

e value

%identity

Alignment

P27927 60S ribosomal protein L16, mitochondrial

1.8e-37

90.24

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR  KIWVRVLADLPITGKP +VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ A LAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

P46801 60S ribosomal protein L16, mitochondrial

1.8e-37

90.24

Show/hide

Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR  KIWVRVLADLPITGKP +VRMGRGKGNPTGWIA VSTGQIPFE+DGVSLSNARQ A LAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

P49389 60S ribosomal protein L16, mitochondrial

4.1e-37

89.02

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR  KIWVRVLADLPITGKP +VRMGRGKGNPTGWIA VSTGQIPFE+DGVSL+NARQ A LAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

Q04715 60S ribosomal protein L16, mitochondrial

2.5e-26

88.89

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQ
        MSGQFRR GKIWVRVLAD+PITGKPT+VRMGRGKGNPTGWIA VS GQI FE+DGVSLSNARQ
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQ

Q95747 60S ribosomal protein L16, mitochondrial

5.9e-36

87.8

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Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRV ADLPITGKPT+VRMGRGKGNPTGWIA VSTGQI FE+DGVSL+NARQ ATLAAHK C STKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

6.1e-12

46.27

Show/hide

Query:  VRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFV
        V + AD P+T +P + RMGRGKG P  W+A V  G+I +E+ GVS   AR+  ++AA K  + TKF+
Subjt:  VRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFV

ATCG00790.1 ribosomal protein L16

7.7e-15

44.3

Show/hide

Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFV
        M+   RR GKIWVR+  D P+T +P + RMG GKG+P  W+A V  G+I +E+ GV  + AR+  ++AA K    T+F+
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFV

ATMG00080.1 ribosomal protein L16

4.1e-40

91.46

Show/hide

Query:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS
        MSGQFRR GKIWVRV ADLPITGKPT+VRMGRGKGNPTGWIA VSTGQIPFE+DGVSL+NARQ ATLAAHKPCSSTKFVQWS
Subjt:  MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

Sequences

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CDS sequence

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ATGAGCGGACAATTTCGAAGATATGGTAAAATATGGGTAAGAGTTCTTGCAGATCTCCCTATTACCGGGAAACCTACAAAAGTCAGAATGGGAAGAGGAAAAGGAAATCC
TACGGGTTGGATTGCTTGTGTGTCCACGGGACAAATCCCATTTGAAGTGGATGGTGTGAGTTTGTCAAATGCTCGACAAGTCGCTACATTGGCGGCGCATAAACCATGTT
CGTCAACCAAGTTTGTTCAGTGGTCGTAA

mRNA sequence

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Protein sequence

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MSGQFRRYGKIWVRVLADLPITGKPTKVRMGRGKGNPTGWIACVSTGQIPFEVDGVSLSNARQVATLAAHKPCSSTKFVQWS

Lsi08G002080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome