CuGenDBv2

Gene ID	Lsi08G002240
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	rRNA intron-encoded homing endonuclease, putative
Genome location	chr08:5118940..5119612
RNA-Seq Expression	Lsi08G002240
Synteny	Lsi08G002240
Gene Ontology terms	GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0004519 - endonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF1854967.1 hypothetical protein Lal_00048035 [Lupinus albus]

7.5e-59

95.31

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Query:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS
        +KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKS
Subjt:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS

Query:  LGSGGSMVARLKLKGIDGRAPPGVEPAA
        LGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  LGSGGSMVARLKLKGIDGRAPPGVEPAA

KAF1855943.1 hypothetical protein Lal_00046709 [Lupinus albus]

4.4e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

KAF1856092.1 hypothetical protein Lal_00045206 [Lupinus albus]

4.4e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

KAF1856185.1 hypothetical protein Lal_00046585 [Lupinus albus]

4.4e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

KAF1891669.1 hypothetical protein Lal_00046524, partial [Lupinus albus]

7.5e-59

95.31

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Query:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS
        +KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKS
Subjt:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS

Query:  LGSGGSMVARLKLKGIDGRAPPGVEPAA
        LGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  LGSGGSMVARLKLKGIDGRAPPGVEPAA

TrEMBL top hits

e value

%identity

Alignment

A0A6A5L4S7 Uncharacterized protein

3.6e-59

95.31

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Query:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS
        +KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKS
Subjt:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS

Query:  LGSGGSMVARLKLKGIDGRAPPGVEPAA
        LGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  LGSGGSMVARLKLKGIDGRAPPGVEPAA

A0A6A5L9N6 Uncharacterized protein

2.1e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

A0A6A5LBQ2 Uncharacterized protein

2.1e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

A0A6A5P2N0 Uncharacterized protein

2.1e-59

95.35

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Query:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK
        M KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSK
Subjt:  MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSK

Query:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA
        SLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  SLGSGGSMVARLKLKGIDGRAPPGVEPAA

A0A6A5P3Y1 Uncharacterized protein (Fragment)

3.6e-59

95.31

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Query:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS
        +KKLVVGPWVGSIGPP+V TGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKS
Subjt:  IKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKS

Query:  LGSGGSMVARLKLKGIDGRAPPGVEPAA
        LGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  LGSGGSMVARLKLKGIDGRAPPGVEPAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTAAAAAGCTCGTAGTTGGACCTTGGGTTGGGTCGATCGGTCCGCCTATGGTGAGCACCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTA
ACTGGCCGGGTCGTGCCTCCGGCGCTACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGAT
ACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGG
GGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

mRNA sequence

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Protein sequence

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MIKKLVVGPWVGSIGPPMVSTGRLVPSAGDALLALTGRVVPPALRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSG
GSMVARLKLKGIDGRAPPGVEPAA

Lsi08G002240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome