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Lsi08G002270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRegulator of rDNA transcription protein 15
Genome locationchr08:5122577..5127918
RNA-Seq ExpressionLsi08G002270
SyntenyLsi08G002270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2058605.1 unnamed protein product, partial [Brassica napus]2.0e-1687.04Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWH-SVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMSTTGRE H SVLRIFKGR  APDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWH-SVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

KAF1854748.1 hypothetical protein Lal_00045027 [Lupinus albus]1.6e-1890.57Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMSTTGR  HSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

KAF2282272.1 hypothetical protein GH714_044005 [Hevea brasiliensis]1.3e-1584.62Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTS
        P   GCSPWRPDAVMSTTGR  HSVLRIF GRRGAPDT RRAVLF+PLDPTS
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTS

PHT25112.1 hypothetical protein CQW23_35246 [Capsicum baccatum]4.9e-1572.31Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRR------------GAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMSTTGR  HSVLRIFKGRR             APDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRR------------GAPDTTRRAVLFQPLDPTSG

PHT27210.1 hypothetical protein CQW23_33177 [Capsicum baccatum]7.6e-1684.91Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P   GCSPWRPDAVMSTTGR  HSVLRIFKG   APDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

TrEMBL top hitse value%identityAlignment
A0A2G2UWK6 Uncharacterized protein2.4e-1572.31Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRR------------GAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMSTTGR  HSVLRIFKGRR             APDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRR------------GAPDTTRRAVLFQPLDPTSG

A0A2G2V2I9 Uncharacterized protein3.7e-1684.91Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P   GCSPWRPDAVMSTTGR  HSVLRIFKG   APDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

A0A4S4E9T2 Uncharacterized protein9.1e-1579.25Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMS TGR  HSVL IFKGRRG PDT + AVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

A0A6A5L3Z3 Uncharacterized protein8.0e-1990.57Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
        P+  GCSPWRPDAVMSTTGR  HSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG

A0A6A6K0E3 Uncharacterized protein6.3e-1684.62Show/hide
Query:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTS
        P   GCSPWRPDAVMSTTGR  HSVLRIF GRRGAPDT RRAVLF+PLDPTS
Subjt:  PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGATCAACCAGGTAGCATTCCTACACGACGTCGCAGCTCGCATGCCGTCACCTA
CTGGCGTCCGTTAGGACAACAGAGGGCGCCGGATCAACGCGGGGAGCGAGCGTCATTCGTCGAAACAATCTGTAAAGGCAACACGTTTGAGAGACTTCTCAAGCATATCA
TGCCGCCGAATGCACCGCATCCGAGAGAGCGAGCACCGACAACGCGGCCCGCAACGAGCCTTGGAAAGGCCGAAGCGGAACGCGACGCGGGCTTTGGGGTTCGTCGTGCA
CCCAACGAGGGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGTGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGA
CACCACGCGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGATCAACCAGGTAGCATTCCTACACGACGTCGCAGCTCGCATGCCGTCACCTA
CTGGCGTCCGTTAGGACAACAGAGGGCGCCGGATCAACGCGGGGAGCGAGCGTCATTCGTCGAAACAATCTGTAAAGGCAACACGTTTGAGAGACTTCTCAAGCATATCA
TGCCGCCGAATGCACCGCATCCGAGAGAGCGAGCACCGACAACGCGGCCCGCAACGAGCCTTGGAAAGGCCGAAGCGGAACGCGACGCGGGCTTTGGGGTTCGTCGTGCA
CCCAACGAGGGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGTGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGCGCACCGGA
CACCACGCGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGA
Protein sequenceShow/hide protein sequence
MHPFQKSGFVARISSRITTDQPGSIPTRRRSSHAVTYWRPLGQQRAPDQRGERASFVETICKGNTFERLLKHIMPPNAPHPRERAPTTRPATSLGKAEAERDAGFGVRRA
PNEGGCSPWRPDAVMSTTGREWHSVLRIFKGRRGAPDTTRRAVLFQPLDPTSG