; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G002300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr08:5129737..5130635
RNA-Seq ExpressionLsi08G002300
SyntenyLsi08G002300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062869.1 putative transmembrane protein [Cucumis melo var. makuwa]3.3e-6998.51Show/hide
Query:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
        MPQVD RTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
Subjt:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP

Query:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS
        FQGTCARSAAEDASPDYNSDVEDARFSSWALP S
Subjt:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS

KAE8637537.1 hypothetical protein CSA_017393 [Cucumis sativus]2.3e-9178.21Show/hide
Query:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
        MPQVD RTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
Subjt:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP

Query:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS-----------SFGR---------RRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSH
        FQGTCARSAAEDASPDYNS+V+DARFSSWALP S           ++GR         RRSEG     +GG V+  TR+RGWINHRSVATT  EDSNLSH
Subjt:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS-----------SFGR---------RRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSH

Query:  PRDGAHGRPACAPARATSPHGGLRGGAAMRDAQA
        P DGAHGRP CA AR TSPHGG RG     D  A
Subjt:  PRDGAHGRPACAPARATSPHGGLRGGAAMRDAQA

KAF7112640.1 hypothetical protein RHSIM_RhsimUnG0208700 [Rhododendron simsii]2.0e-6659.06Show/hide
Query:  GSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARS
        G SPFHIR G IAGPH LPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGATGSE +GALTLSGAPFQGT ARS
Subjt:  GSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARS

Query:  AAEDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPACAPARATSPHGGLRGGAA
         AEDASPDYNS+ E ARFSSWA+P                                  S+A T                                     
Subjt:  AAEDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPACAPARATSPHGGLRGGAA

Query:  MRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
                   R + AQLAFKDS+V GILQFTPSIAFRYVLHRC+SRDIRCRES
Subjt:  MRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

KAG6384451.1 hypothetical protein SASPL_155737 [Salvia splendens]1.1e-8069.02Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
        SPFHIR GHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPR ATGS  +GALTLSGAPFQGT ARSAA
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA

Query:  EDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINH--RSVATTGAEDSNLS-HPRDGAHGRPACAPARATSPHGGLRGGA
        EDASPDYNSD   ARFSSWA P          G     +G  V  AT  R  ++    + A  G     L   P  G   R      R   P G    GA
Subjt:  EDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINH--RSVATTGAEDSNLS-HPRDGAHGRPACAPARATSPHGGLRGGA

Query:  AMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
         MRDAQADVPSA+ LRAQLAFKDS+V GILQFTPSIAFRYVLHRCESRDIRCRES
Subjt:  AMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

KEH17348.1 hypothetical protein MTR_0021s0160 [Medicago truncatula]4.2e-7263.3Show/hide
Query:  PFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAAE
        PF IR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG++LPPD GCIPKQPDSLTAPRGATGS  +GALTL GAPFQGT ARS AE
Subjt:  PFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAAE

Query:  DASPDYNSDVEDARFSSWALPASSFGRR------------RSEGRCRSPQG--GGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPAC--APAR
        DASPDYNSD   ARFSSWA+P S    R            RS+ R     G    +  +TR    I+     T           R  AH RP     P  
Subjt:  DASPDYNSDVEDARFSSWALPASSFGRR------------RSEGRCRSPQG--GGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPAC--APAR

Query:  ATSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
        A+     + G    RDAQA VPSA   RAQLAFKDS+VRGILQFTP IAFRYVLHRCESRDIRCRES
Subjt:  ATSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

TrEMBL top hitse value%identityAlignment
A0A0A0KEK9 Uncharacterized protein4.3e-9178.21Show/hide
Query:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
        MPQVD RTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP
Subjt:  MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAP

Query:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS-----------SFGR---------RRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSH
        FQGTCARSAAEDASPDYNS+V+DARFSSWALP S           ++GR         RRSEG     +G  VK  TR+RGWINHRSVATT  EDSNLSH
Subjt:  FQGTCARSAAEDASPDYNSDVEDARFSSWALPAS-----------SFGR---------RRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSH

Query:  PRDGAHGRPACAPARATSPHGGLRGGAAMRDAQA
        P DGAHGRP CA AR TSPHGG RG     D  A
Subjt:  PRDGAHGRPACAPARATSPHGGLRGGAAMRDAQA

A0A6N2KB50 Uncharacterized protein (Fragment)1.0e-7965.79Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
        SPFHIR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGA GS  +GALTLSGAPFQGT A SAA
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA

Query:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA
        EDASPDYNS+   ARFSSWA P S           ++GR  S  E +C   +      +TR        + A  G     L   P  G   R      R 
Subjt:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA

Query:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
          P G    GA MRD QADVPS RR RAQLAFKDS+V GILQFTPSIAFRYVLHRCESRDIRCRES
Subjt:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

A0A6N2L797 Uncharacterized protein (Fragment)1.0e-7965.79Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
        SPFHIR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGA GS  +GALTLSGAPFQGT A SAA
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA

Query:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA
        EDASPDYNS+   ARFSSWA P S           ++GR  S  E +C   +      +TR        + A  G     L   P  G   R      R 
Subjt:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA

Query:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
          P G    GA MRD QADVPS RR RAQLAFKDS+V GILQFTPSIAFRYVLHRCESRDIRCRES
Subjt:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

A0A6N2MPB6 Uncharacterized protein1.0e-7965.79Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
        SPFHIR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGA GS  +GALTLSGAPFQGT A SAA
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA

Query:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA
        EDASPDYNS+   ARFSSWA P S           ++GR  S  E +C   +      +TR        + A  G     L   P  G   R      R 
Subjt:  EDASPDYNSDVEDARFSSWALPAS-----------SFGRRRS--EGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLS-HPRDGAHGRPACAPARA

Query:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
          P G    GA MRD QADVPS RR RAQLAFKDS+V GILQFTPSIAFRYVLHRCESRDIRCRES
Subjt:  TSPHGGLRGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

A0A6N2NG36 Uncharacterized protein5.0e-7967.18Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
        SPFHIR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGA GS  +GALTLSGAPFQGT A SAA
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA

Query:  EDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPACA-------PARATSPHGGL
        EDASPDYNS+   ARFSSWA P          G     +G  V  AT  R  ++   ++TT    +     R G   RP          P R   P G  
Subjt:  EDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPACA-------PARATSPHGGL

Query:  RGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES
          GA MRD QADVPS RR RAQLAFKDS+V GILQFTPSIAFRYVLHRCESRDIRCRES
Subjt:  RGGAAMRDAQADVPSARRLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAAGTCGATCGGCGGACCGGCTCATCACCGTTCCACATCCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAGAATTTACCGCCCGATTGGGGCTGCATTCCCA
AACAACCCGACTCGTTGACAGCGCCTCGTGGTGCGACAGGGTCCGAGCGCAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCCCGGTCCGCCGCT
GAGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGCTGGGCTCTTCCCGCGTCGTCCTTTGGGAGACGGCGTTCAGAGGGTCGGTGTAGGAG
TCCACAAGGAGGCGGCGTCAAATTCGCGACGCGGTACCGAGGTTGGATCAACCACCGTAGTGTCGCGACGACGGGCGCCGAGGACTCGAATTTAAGCCATCCGCGCGACG
GTGCGCACGGGAGGCCAGCGTGTGCCCCCGCCCGCGCAACGAGCCCACATGGGGGGTTGCGTGGGGGGGCAGCGATGCGTGACGCCCAGGCAGACGTGCCCTCGGCCAGA
AGGCTCCGGGCGCAACTTGCGTTCAAAGACTCGGTGGTTCGCGGGATCCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATAT
CCGTTGCCGAGAGTCGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAAGTCGATCGGCGGACCGGCTCATCACCGTTCCACATCCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAGAATTTACCGCCCGATTGGGGCTGCATTCCCA
AACAACCCGACTCGTTGACAGCGCCTCGTGGTGCGACAGGGTCCGAGCGCAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCCCGGTCCGCCGCT
GAGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGCTGGGCTCTTCCCGCGTCGTCCTTTGGGAGACGGCGTTCAGAGGGTCGGTGTAGGAG
TCCACAAGGAGGCGGCGTCAAATTCGCGACGCGGTACCGAGGTTGGATCAACCACCGTAGTGTCGCGACGACGGGCGCCGAGGACTCGAATTTAAGCCATCCGCGCGACG
GTGCGCACGGGAGGCCAGCGTGTGCCCCCGCCCGCGCAACGAGCCCACATGGGGGGTTGCGTGGGGGGGCAGCGATGCGTGACGCCCAGGCAGACGTGCCCTCGGCCAGA
AGGCTCCGGGCGCAACTTGCGTTCAAAGACTCGGTGGTTCGCGGGATCCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATAT
CCGTTGCCGAGAGTCGTTGTGA
Protein sequenceShow/hide protein sequence
MPQVDRRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLSGAPFQGTCARSAA
EDASPDYNSDVEDARFSSWALPASSFGRRRSEGRCRSPQGGGVKFATRYRGWINHRSVATTGAEDSNLSHPRDGAHGRPACAPARATSPHGGLRGGAAMRDAQADVPSAR
RLRAQLAFKDSVVRGILQFTPSIAFRYVLHRCESRDIRCRESL