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Lsi08G002360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G002360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF170
Genome locationchr08:5190660..5191330
RNA-Seq ExpressionLsi08G002360
SyntenyLsi08G002360
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR010652 - Domain of unknown function DUF1232
IPR038896 - E3 ubiquitin-protein ligase RNF170


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463070.1 PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]3.2e-3178.5Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIA                   MVLSVVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        YNRHGGT
Subjt:  YNRHGGT

XP_022932121.1 E3 ubiquitin-protein ligase RNF170-like [Cucurbita moschata]1.8e-2974.77Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLRELLNPQRSLPLVIR RVY A                   M LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        +NRHGGT
Subjt:  YNRHGGT

XP_022972895.1 E3 ubiquitin-protein ligase RNF170-like [Cucurbita maxima]1.8e-2974.77Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLRELLNPQRSLPLVIR RVY A                   M LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        +NRHGGT
Subjt:  YNRHGGT

XP_031743956.1 E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus]9.4e-3177.57Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLREL NPQRSLPLVIRTRVYIA                   MVLSV+Y VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        YNRHGGT
Subjt:  YNRHGGT

XP_038884720.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida]1.3e-3281.31Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVY A                   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        YNRHGGT
Subjt:  YNRHGGT

TrEMBL top hitse value%identityAlignment
A0A1S3CIS2 E3 ubiquitin-protein ligase RNF1701.6e-3178.5Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIA                   MVLSVVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        YNRHGGT
Subjt:  YNRHGGT

A0A5N5KHQ5 E3 ubiquitin-protein ligase RNF1702.2e-2558.88Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+QDLPFLLRRLLRE+++PQRSLPLVI+ RVYIAV  + +       + +  +MVLS +Y +SP+DIIPE ++G+ GL+DD+ ++LICFL++AAIYRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        Y+R+GG+
Subjt:  YNRHGGT

A0A6J1DFH0 E3 ubiquitin-protein ligase RNF1705.6e-2972.9Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+QDLPFLLRRLLRELL+PQRSLPLVIR RVYIA                   MVLSVVY +SPIDIIPEA+LG+FGLMDDIFILLICFLYIAA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        Y RHGG+
Subjt:  YNRHGGT

A0A6J1EVH0 E3 ubiquitin-protein ligase RNF1708.6e-3074.77Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLRELLNPQRSLPLVIR RVY A                   M LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        +NRHGGT
Subjt:  YNRHGGT

A0A6J1I9X5 E3 ubiquitin-protein ligase RNF1708.6e-3074.77Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RLQDLPFLLRRLLRELLNPQRSLPLVIR RVY A                   M LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        +NRHGGT
Subjt:  YNRHGGT

SwissProt top hitse value%identityAlignment
F1MK05 E3 ubiquitin-protein ligase RNF1705.4e-0531.07Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+ DLP LLR   RE+                 +V  +  +  + I  CL    + +  Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNR
          R
Subjt:  YNR

Q28DS3 E3 ubiquitin-protein ligase RNF1706.4e-0634.95Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+ DLP LLR   RE+                 +V  +  +  + I  CL    + ++ Y VSP+DIIPEA+ GL G +DD F+L +  +YI+ +YR V+
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNR
          R
Subjt:  YNR

Q5PPX5 E3 ubiquitin-protein ligase RNF1701.7e-0634.95Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+ DLP LLR   RE+                 +V  +  +  + I  CL    + +++Y VSP+DIIPEAL G+ G +DD+F+L +  +YI+ +YR V+
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNR
          R
Subjt:  YNR

Q7SZN2 E3 ubiquitin-protein ligase RNF1704.4e-0733.96Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        RL+D+P LLR   RE+ +    L  + R R+ + V                     ++ Y VSP+D +PE +LGL G +DD F++L+ F+YI+ +YR V+
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGG
          R  G
Subjt:  YNRHGG

Q96K19 E3 ubiquitin-protein ligase RNF1705.4e-0531.07Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+ DLP LLR   RE+                 +V  +  +  + I  CL    + +  Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNR
          R
Subjt:  YNR

Arabidopsis top hitse value%identityAlignment
AT1G22510.1 RING/U-box protein with domain of unknown function (DUF 1232)1.4e-2758.88Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA                   ++LS +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        Y+RHGG+
Subjt:  YNRHGGT

AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)1.4e-2758.88Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA                   ++LS +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        Y+RHGG+
Subjt:  YNRHGGT

AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)8.8e-2759.81Show/hide
Query:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        R+QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA                   M+LS VY +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Query:  YNRHGGT
        Y RH G+
Subjt:  YNRHGGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGACTGCAGGACCTTCCTTTTCTCCTACGGAGGTTGCTTCGGGAACTACTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAGTTAAGTC
AATGACTCAACTCAACTTTCTCAACATCGACTATTGCTTAGGAATTAACATGGTACTAAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAG
GATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGGAACTTGA
mRNA sequenceShow/hide mRNA sequence
CGACTGCAGGACCTTCCTTTTCTCCTACGGAGGTTGCTTCGGGAACTACTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAGTTAAGTC
AATGACTCAACTCAACTTTCTCAACATCGACTATTGCTTAGGAATTAACATGGTACTAAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAG
GATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGGAACTTGAGTTATC
CTTGGTAGCTTTTCCAAGAATTGTAAGAAATCAGAGTAGCCATTTTTTTTTTTTTTTTGGAGGGGGGGGGGGGGGGGGGG
Protein sequenceShow/hide protein sequence
RLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAVKSMTQLNFLNIDYCLGINMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGGT